Vunguiculata Vigun10g093200
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Vunguiculata_Vigun10g093200 [ Vigun10g093200] |
Vu10 | 26735265 | 26741844 | v1.1 | Vigna unguiculata (Phytozome 13) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Vunguiculata_Vigun10g093200.1 Vigun10g093200.1 |
High | No | 997 | OG0004575 | Get ORF Coding potential... Type: noncoding Potential: -0.708 Folding energies... MFEI: -24.112 AMFE: -0.626 GC content %: 38.516 | |
| Vunguiculata_Vigun10g093200.2 Vigun10g093200.2 |
High | No | 940 | OG0004575 | Get ORF Coding potential... Type: noncoding Potential: -0.694 Folding energies... MFEI: -24.170 AMFE: -0.622 GC content %: 38.830 | |
| Vunguiculata_Vigun10g093200.3 Vigun10g093200.3 |
High | No | 861 | OG0004575 | Get ORF Coding potential... Type: noncoding Potential: -0.672 Folding energies... MFEI: -24.681 AMFE: -0.631 GC content %: 39.141 | |
| Vunguiculata_Vigun10g093200.4 Vigun10g093200.4 |
High | No | 911 | OG0004575 | Get ORF Coding potential... Type: noncoding Potential: -0.991 Folding energies... MFEI: -24.171 AMFE: -0.627 GC content %: 38.529 | |
| Vunguiculata_Vigun10g093200.5 Vigun10g093200.5 |
High | No | 865 | OG0004575 | Get ORF Coding potential... Type: noncoding Potential: -0.673 Folding energies... MFEI: -24.728 AMFE: -0.631 GC content %: 39.191 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
