GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Zmays5_Zm00001eb095570 Zm00001eb095570	2	167405600	167407926	v5	Zea mays (Ensembl Plants 51)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Zmays5_Zm00001eb095570_T001 Zm00001eb095570_T001	High	No	874	[1]		Get ORF Coding potential... Type: noncoding Potential: -0.527 Folding energies... MFEI: -24.416 AMFE: -0.565 GC content %: 43.249
Zmays5_Zm00001eb095570_T002 Zm00001eb095570_T002	High	No	826	[2]		Get ORF Coding potential... Type: noncoding Potential: -0.513 Folding energies... MFEI: -25.230 AMFE: -0.569 GC content %: 44.310

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).