GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Zmays5_Zm00001eb112780 Zm00001eb112780	2	227978341	227980296	v5	Zea mays (Ensembl Plants 51)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Zmays5_Zm00001eb112780_T001 Zm00001eb112780_T001	High	No	806	[1]		Get ORF Coding potential... Type: noncoding Potential: -1.070 Folding energies... MFEI: -25.906 AMFE: -0.554 GC content %: 46.774
Zmays5_Zm00001eb112780_T002 Zm00001eb112780_T002	High	No	636	[2]		Get ORF Coding potential... Type: noncoding Potential: -0.838 Folding energies... MFEI: -27.028 AMFE: -0.567 GC content %: 47.642

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).