GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Zmays5_Zm00001eb135390 Zm00001eb135390	3	117214789	117215353	v5	Zea mays (Ensembl Plants 51)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Zmays5_Zm00001eb135390_T001 Zm00001eb135390_T001	High	No	333	[1]		Get ORF Coding potential... Type: noncoding Potential: -1.097 Folding energies... MFEI: -38.318 AMFE: -0.583 GC content %: 65.766
Zmays5_Zm00001eb135390_T002 Zm00001eb135390_T002	High	No	312	[2]		Get ORF Coding potential... Type: noncoding Potential: -1.080 Folding energies... MFEI: -39.327 AMFE: -0.584 GC content %: 67.308
Zmays5_Zm00001eb135390_T003 Zm00001eb135390_T003	High	No	225	[3]		Get ORF Coding potential... Type: noncoding Potential: -1.259 Folding energies... MFEI: -48.489 AMFE: -0.713 GC content %: 68.000

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).