Zmays5 Zm00001eb167280
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Zmays5_Zm00001eb167280 Zm00001eb167280 |
4 | 7488604 | 7491927 | v5 | Zea mays (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Zmays5_Zm00001eb167280_T001 Zm00001eb167280_T001 |
High | No | 479 | [1] | Get ORF Coding potential... Type: noncoding Potential: -1.126 Folding energies... MFEI: -29.624 AMFE: -0.666 GC content %: 44.468 | |
| Zmays5_Zm00001eb167280_T002 Zm00001eb167280_T002 |
High | No | 479 | [2] | Get ORF Coding potential... Type: noncoding Potential: -1.060 Folding energies... MFEI: -28.058 AMFE: -0.634 GC content %: 44.259 | |
| Zmays5_Zm00001eb167280_T003 Zm00001eb167280_T003 |
High | No | 473 | [3] | Get ORF Coding potential... Type: noncoding Potential: -1.089 Folding energies... MFEI: -30.719 AMFE: -0.679 GC content %: 45.243 | |
| Zmays5_Zm00001eb167280_T004 Zm00001eb167280_T004 |
High | No | 477 | [4] | Get ORF Coding potential... Type: noncoding Potential: -1.100 Folding energies... MFEI: -28.281 AMFE: -0.642 GC content %: 44.025 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
