Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Zmays5_Zm00001eb179500 Zm00001eb179500 |
4 | 84925169 | 84931732 | v5 | Zea mays (Ensembl Plants 51) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Zmays5_Zm00001eb179500_T001 Zm00001eb179500_T001 |
Low | No | 527 | [1] | Get ORF Coding potential... Type: noncoding Potential: -0.920 Folding energies... MFEI: -21.973 AMFE: -0.526 GC content %: 41.746 | |
Zmays5_Zm00001eb179500_T002 Zm00001eb179500_T002 |
Low | No | 397 | [2] | Get ORF Coding potential... Type: noncoding Potential: -0.839 Folding energies... MFEI: -20.076 AMFE: -0.489 GC content %: 41.058 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Zmays5_Zm00001eb179500_T001 | RepBase (RepeatMasker) | 0000-00-00 | RC/Helitron | |
Zmays5_Zm00001eb179500_T002 | RepBase (RepeatMasker) | 0000-00-00 | RC/Helitron |