GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Zmays5_Zm00001eb212210 Zm00001eb212210	5	3363644	3367809	v5	Zea mays (Ensembl Plants 51)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Zmays5_Zm00001eb212210_T001 Zm00001eb212210_T001	High	No	733	[1]		Get ORF Coding potential... Type: noncoding Potential: -0.943 Folding energies... MFEI: -21.269 AMFE: -0.520 GC content %: 40.928
Zmays5_Zm00001eb212210_T002 Zm00001eb212210_T002	High	No	781	[2]		Get ORF Coding potential... Type: noncoding Potential: -0.961 Folding energies... MFEI: -20.948 AMFE: -0.514 GC content %: 40.717
Zmays5_Zm00001eb212210_T003 Zm00001eb212210_T003	High	No	715	[3]		Get ORF Coding potential... Type: noncoding Potential: -0.936 Folding energies... MFEI: -20.000 AMFE: -0.524 GC content %: 38.182

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).