GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Zmays5_Zm00001eb282500 Zm00001eb282500	6	136111675	136114224	v5	Zea mays (Ensembl Plants 51)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Zmays5_Zm00001eb282500_T001 Zm00001eb282500_T001	High	No	261	[1]		Get ORF Coding potential... Type: noncoding Potential: -0.819 Folding energies... MFEI: -26.590 AMFE: -0.655 GC content %: 40.613
Zmays5_Zm00001eb282500_T002 Zm00001eb282500_T002	High	No	644	[2]		Get ORF Coding potential... Type: noncoding Potential: -1.061 Folding energies... MFEI: -27.578 AMFE: -0.696 GC content %: 39.596
Zmays5_Zm00001eb282500_T003 Zm00001eb282500_T003	High	No	757	[3]		Get ORF Coding potential... Type: noncoding Potential: -1.187 Folding energies... MFEI: -21.915 AMFE: -0.619 GC content %: 35.403

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).