Zmays Zm00001d002239

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Assembly Species Details

Zmays_Zm00001d002239
[ Zm00001d002239]
2 8607518 8615365 v4 Zea mays (Phytozome 13)
Coding?
Yes


Transcript features
Help.png

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Orthologous group Sequence Details

Zmays_Zm00001d002239_T001
Zm00001d002239_T001
Low No 4261 [1]
Coding potential...
Type: noncoding Potential: -1.129
Folding energies...
MFEI: -27.726 AMFE: -0.632
GC content
%: 43.839
Zmays_Zm00001d002239_T009
Zm00001d002239_T009
Low No 3688 [2]
Coding potential...
Type: noncoding Potential: -1.120
Folding energies...
MFEI: -26.131 AMFE: -0.678
GC content
%: 38.530
Zmays_Zm00001d002239_T010
Zm00001d002239_T010
Low No 3899 [3]
Coding potential...
Type: noncoding Potential: -0.870
Folding energies...
MFEI: -27.915 AMFE: -0.647
GC content
%: 43.139
Zmays_Zm00001d002239_T011
Zm00001d002239_T011
Low No 5903 [4]
Coding potential...
Type: noncoding Potential: -1.059
Folding energies...
MFEI: -27.273 AMFE: -0.637
GC content
%: 42.792
Zmays_Zm00001d002239_T012
Zm00001d002239_T012
Low No 5459 [5]
Coding potential...
Type: noncoding Potential: -1.057
Folding energies...
MFEI: -27.478 AMFE: -0.627
GC content
%: 43.836
Zmays_Zm00001d002239_T013
Zm00001d002239_T013
Low No 4718 [6]
Coding potential...
Type: noncoding Potential: -1.052
Folding energies...
MFEI: -26.098 AMFE: -0.652
GC content
%: 40.038
Zmays_Zm00001d002239_T014
Zm00001d002239_T014
Low No 6016 [7]
Coding potential...
Type: noncoding Potential: -1.060
Folding energies...
MFEI: -27.242 AMFE: -0.631
GC content
%: 43.168
Zmays_Zm00001d002239_T016
Zm00001d002239_T016
Low No 3219 [8]
Coding potential...
Type: noncoding Potential: -1.091
Folding energies...
MFEI: -30.276 AMFE: -0.626
GC content
%: 48.338
Zmays_Zm00001d002239_T017
Zm00001d002239_T017
Low No 6056 [9]
Coding potential...
Type: noncoding Potential: -1.060
Folding energies...
MFEI: -27.081 AMFE: -0.631
GC content
%: 42.883
Zmays_Zm00001d002239_T018
Zm00001d002239_T018
Low No 6058 [10]
Coding potential...
Type: noncoding Potential: -1.060
Folding energies...
MFEI: -27.621 AMFE: -0.638
GC content
%: 43.315
Zmays_Zm00001d002239_T020
Zm00001d002239_T020
Low No 5502 [11]
Coding potential...
Type: noncoding Potential: -1.057
Folding energies...
MFEI: -25.556 AMFE: -0.647
GC content
%: 39.477
Zmays_Zm00001d002239_T022
Zm00001d002239_T022
Low No 4161 [12]
Coding potential...
Type: noncoding Potential: -1.063
Folding energies...
MFEI: -29.344 AMFE: -0.630
GC content
%: 46.551
Zmays_Zm00001d002239_T023
Zm00001d002239_T023
Low No 4931 [13]
Coding potential...
Type: noncoding Potential: -1.053
Folding energies...
MFEI: -25.972 AMFE: -0.645
GC content
%: 40.276
Zmays_Zm00001d002239_T024
Zm00001d002239_T024
Low No 4755 [14]
Coding potential...
Type: noncoding Potential: -1.052
Folding energies...
MFEI: -26.042 AMFE: -0.647
GC content
%: 40.252
Zmays_Zm00001d002239_T025
Zm00001d002239_T025
Low No 6246 [15]
Coding potential...
Type: noncoding Potential: -1.061
Folding energies...
MFEI: -27.291 AMFE: -0.632
GC content
%: 43.164
Zmays_Zm00001d002239_T026
Zm00001d002239_T026
Low No 5887 [16]
Coding potential...
Type: noncoding Potential: -1.059
Folding energies...
MFEI: -27.486 AMFE: -0.633
GC content
%: 43.435
Zmays_Zm00001d002239_T028
Zm00001d002239_T028
Low No 5971 [17]
Coding potential...
Type: noncoding Potential: -1.060
Folding energies...
MFEI: -27.243 AMFE: -0.638
GC content
%: 42.690
Zmays_Zm00001d002239_T029
Zm00001d002239_T029
Low No 3900 [18]
Coding potential...
Type: noncoding Potential: -1.099
Folding energies...
MFEI: -29.087 AMFE: -0.634
GC content
%: 45.897
Zmays_Zm00001d002239_T030
Zm00001d002239_T030
Low No 4036 [19]
Coding potential...
Type: noncoding Potential: -1.062
Folding energies...
MFEI: -29.081 AMFE: -0.628
GC content
%: 46.308
Zmays_Zm00001d002239_T032
Zm00001d002239_T032
Low No 5926 [20]
Coding potential...
Type: noncoding Potential: -1.060
Folding energies...
MFEI: -27.420 AMFE: -0.634
GC content
%: 43.267
Zmays_Zm00001d002239_T033
Zm00001d002239_T033
Low No 6239 [21]
Coding potential...
Type: noncoding Potential: -1.061
Folding energies...
MFEI: -27.419 AMFE: -0.640
GC content
%: 42.875
Zmays_Zm00001d002239_T035
Zm00001d002239_T035
Low No 5914 [22]
Coding potential...
Type: noncoding Potential: -1.060
Folding energies...
MFEI: -27.220 AMFE: -0.631
GC content
%: 43.118
Zmays_Zm00001d002239_T036
Zm00001d002239_T036
Low No 6138 [23]
Coding potential...
Type: noncoding Potential: -1.061
Folding energies...
MFEI: -27.462 AMFE: -0.630
GC content
%: 43.565
Zmays_Zm00001d002239_T037
Zm00001d002239_T037
Low No 6140 [24]
Coding potential...
Type: noncoding Potential: -1.061
Folding energies...
MFEI: -26.951 AMFE: -0.641
GC content
%: 42.020
Zmays_Zm00001d002239_T039
Zm00001d002239_T039
Low No 3859 [25]
Coding potential...
Type: noncoding Potential: -1.060
Folding energies...
MFEI: -29.295 AMFE: -0.634
GC content
%: 46.204
Zmays_Zm00001d002239_T040
Zm00001d002239_T040
Low No 5913 [26]
Coding potential...
Type: noncoding Potential: -1.060
Folding energies...
MFEI: -27.225 AMFE: -0.635
GC content
%: 42.889
Zmays_Zm00001d002239_T041
Zm00001d002239_T041
Low No 5774 [27]
Coding potential...
Type: noncoding Potential: -1.017
Folding energies...
MFEI: -27.418 AMFE: -0.634
GC content
%: 43.228
Zmays_Zm00001d002239_T042
Zm00001d002239_T042
Low No 5831 [28]
Coding potential...
Type: noncoding Potential: -1.059
Folding energies...
MFEI: -27.299 AMFE: -0.631
GC content
%: 43.286
Zmays_Zm00001d002239_T044
Zm00001d002239_T044
Low No 5045 [29]
Coding potential...
Type: noncoding Potential: -1.054
Folding energies...
MFEI: -25.659 AMFE: -0.639
GC content
%: 40.178
Zmays_Zm00001d002239_T045
Zm00001d002239_T045
Low No 5734 [30]
Coding potential...
Type: noncoding Potential: -1.059
Folding energies...
MFEI: -26.468 AMFE: -0.643
GC content
%: 41.193
Zmays_Zm00001d002239_T046
Zm00001d002239_T046
Low No 5855 [31]
Coding potential...
Type: noncoding Potential: -1.059
Folding energies...
MFEI: -27.510 AMFE: -0.634
GC content
%: 43.382
Zmays_Zm00001d002239_T047
Zm00001d002239_T047
Low No 3124 [32]
Coding potential...
Type: noncoding Potential: -1.089
Folding energies...
MFEI: -30.887 AMFE: -0.633
GC content
%: 48.816
Zmays_Zm00001d002239_T048
Zm00001d002239_T048
Low No 5715 [33]
Coding potential...
Type: noncoding Potential: -1.058
Folding energies...
MFEI: -25.185 AMFE: -0.650
GC content
%: 38.758
Zmays_Zm00001d002239_T051
Zm00001d002239_T051
Low No 4093 [34]
Coding potential...
Type: noncoding Potential: -1.046
Folding energies...
MFEI: -25.138 AMFE: -0.629
GC content
%: 39.946
Zmays_Zm00001d002239_T052
Zm00001d002239_T052
Low No 5219 [35]
Coding potential...
Type: noncoding Potential: -1.055
Folding energies...
MFEI: -25.601 AMFE: -0.641
GC content
%: 39.950
Zmays_Zm00001d002239_T053
Zm00001d002239_T053
Low No 5197 [36]
Coding potential...
Type: noncoding Potential: -1.055
Folding energies...
MFEI: -26.375 AMFE: -0.642
GC content
%: 41.101
Zmays_Zm00001d002239_T054
Zm00001d002239_T054
Low No 5838 [37]
Coding potential...
Type: noncoding Potential: -1.059
Folding energies...
MFEI: -27.191 AMFE: -0.636
GC content
%: 42.737
Zmays_Zm00001d002239_T055
Zm00001d002239_T055
Low No 5969 [38]
Coding potential...
Type: noncoding Potential: -1.060
Folding energies...
MFEI: -27.209 AMFE: -0.639
GC content
%: 42.603
Zmays_Zm00001d002239_T056
Zm00001d002239_T056
Low No 6366 [39]
Coding potential...
Type: noncoding Potential: -1.062
Folding energies...
MFEI: -27.226 AMFE: -0.635
GC content
%: 42.884
Zmays_Zm00001d002239_T058
Zm00001d002239_T058
Low No 6172 [40]
Coding potential...
Type: noncoding Potential: -1.061
Folding energies...
MFEI: -27.043 AMFE: -0.638
GC content
%: 42.369
Zmays_Zm00001d002239_T059
Zm00001d002239_T059
Low No 5892 [41]
Coding potential...
Type: noncoding Potential: -1.059
Folding energies...
MFEI: -27.242 AMFE: -0.630
GC content
%: 43.228
Zmays_Zm00001d002239_T060
Zm00001d002239_T060
Low No 6434 [42]
Coding potential...
Type: noncoding Potential: -1.062
Folding energies...
MFEI: -27.418 AMFE: -0.634
GC content
%: 43.270
Zmays_Zm00001d002239_T061
Zm00001d002239_T061
Low No 3510 [43]
Coding potential...
Type: noncoding Potential: -0.940
Folding energies...
MFEI: -28.584 AMFE: -0.642
GC content
%: 44.530
Zmays_Zm00001d002239_T062
Zm00001d002239_T062
Low No 4864 [44]
Coding potential...
Type: noncoding Potential: -1.053
Folding energies...
MFEI: -27.202 AMFE: -0.653
GC content
%: 41.632
Zmays_Zm00001d002239_T066
Zm00001d002239_T066
Low No 5271 [45]
Coding potential...
Type: noncoding Potential: -1.056
Folding energies...
MFEI: -25.581 AMFE: -0.642
GC content
%: 39.822
Zmays_Zm00001d002239_T067
Zm00001d002239_T067
Low No 4499 [46]
Coding potential...
Type: noncoding Potential: -1.050
Folding energies...
MFEI: -26.259 AMFE: -0.652
GC content
%: 40.276
Zmays_Zm00001d002239_T070
Zm00001d002239_T070
Low No 2956 [47]
Coding potential...
Type: noncoding Potential: -1.046
Folding energies...
MFEI: -30.673 AMFE: -0.648
GC content
%: 47.327
Zmays_Zm00001d002239_T071
Zm00001d002239_T071
Low No 3067 [48]
Coding potential...
Type: noncoding Potential: -0.930
Folding energies...
MFEI: -30.877 AMFE: -0.637
GC content
%: 48.451
Zmays_Zm00001d002239_T072
Zm00001d002239_T072
Low No 5554 [49]
Coding potential...
Type: noncoding Potential: -1.057
Folding energies...
MFEI: -27.324 AMFE: -0.627
GC content
%: 43.572
Zmays_Zm00001d002239_T073
Zm00001d002239_T073
Low No 3099 [50]
Coding potential...
Type: noncoding Potential: -1.075
Folding energies...
MFEI: -30.720 AMFE: -0.633
GC content
%: 48.564
Zmays_Zm00001d002239_T074
Zm00001d002239_T074
Low No 4587 [51]
Coding potential...
Type: noncoding Potential: -1.131
Folding energies...
MFEI: -28.147 AMFE: -0.632
GC content
%: 44.561
Zmays_Zm00001d002239_T075
Zm00001d002239_T075
Low No 3037 [52]
Coding potential...
Type: noncoding Potential: -1.088
Folding energies...
MFEI: -31.057 AMFE: -0.634
GC content
%: 48.963
Zmays_Zm00001d002239_T077
Zm00001d002239_T077
Low No 4160 [53]
Coding potential...
Type: noncoding Potential: -1.046
Folding energies...
MFEI: -25.228 AMFE: -0.633
GC content
%: 39.880
Zmays_Zm00001d002239_T079
Zm00001d002239_T079
Low No 4933 [54]
Coding potential...
Type: noncoding Potential: -1.000
Folding energies...
MFEI: -25.621 AMFE: -0.638
GC content
%: 40.158
Zmays_Zm00001d002239_T080
Zm00001d002239_T080
Low No 3482 [55]
Coding potential...
Type: noncoding Potential: -1.086
Folding energies...
MFEI: -26.505 AMFE: -0.641
GC content
%: 41.327
Zmays_Zm00001d002239_T082
Zm00001d002239_T082
Low No 5996 [56]
Coding potential...
Type: noncoding Potential: -1.060
Folding energies...
MFEI: -27.120 AMFE: -0.639
GC content
%: 42.428
Zmays_Zm00001d002239_T083
Zm00001d002239_T083
Low No 6146 [57]
Coding potential...
Type: noncoding Potential: -1.061
Folding energies...
MFEI: -27.062 AMFE: -0.639
GC content
%: 42.320
Zmays_Zm00001d002239_T084
Zm00001d002239_T084
Low No 3088 [58]
Coding potential...
Type: noncoding Potential: -0.931
Folding energies...
MFEI: -30.687 AMFE: -0.641
GC content
%: 47.895
Zmays_Zm00001d002239_T085
Zm00001d002239_T085
Low No 5938 [59]
Coding potential...
Type: noncoding Potential: -1.060
Folding energies...
MFEI: -27.221 AMFE: -0.635
GC content
%: 42.860
Zmays_Zm00001d002239_T086
Zm00001d002239_T086
Low No 6516 [60]
Coding potential...
Type: noncoding Potential: -1.062
Folding energies...
MFEI: -27.159 AMFE: -0.634
GC content
%: 42.818
Zmays_Zm00001d002239_T087
Zm00001d002239_T087
Low No 4437 [61]
Coding potential...
Type: noncoding Potential: -1.066
Folding energies...
MFEI: -29.031 AMFE: -0.630
GC content
%: 46.067
Zmays_Zm00001d002239_T088
Zm00001d002239_T088
Low No 6187 [62]
Coding potential...
Type: noncoding Potential: -1.061
Folding energies...
MFEI: -27.424 AMFE: -0.631
GC content
%: 43.478
Zmays_Zm00001d002239_T089
Zm00001d002239_T089
Low No 5703 [63]
Coding potential...
Type: noncoding Potential: -1.220
Folding energies...
MFEI: -28.061 AMFE: -0.634
GC content
%: 44.275
Zmays_Zm00001d002239_T090
Zm00001d002239_T090
Low No 3091 [64]
Coding potential...
Type: noncoding Potential: -1.089
Folding energies...
MFEI: -30.941 AMFE: -0.633
GC content
%: 48.852
Zmays_Zm00001d002239_T096
Zm00001d002239_T096
Low No 5377 [65]
Coding potential...
Type: noncoding Potential: -1.056
Folding energies...
MFEI: -27.398 AMFE: -0.640
GC content
%: 42.831
Zmays_Zm00001d002239_T098
Zm00001d002239_T098
Low No 5784 [66]
Coding potential...
Type: noncoding Potential: -1.059
Folding energies...
MFEI: -27.260 AMFE: -0.640
GC content
%: 42.566
Zmays_Zm00001d002239_T099
Zm00001d002239_T099
Low No 5004 [67]
Coding potential...
Type: noncoding Potential: -1.054
Folding energies...
MFEI: -27.906 AMFE: -0.644
GC content
%: 43.325
Zmays_Zm00001d002239_T100
Zm00001d002239_T100
Low No 5607 [68]
Coding potential...
Type: noncoding Potential: -1.058
Folding energies...
MFEI: -27.296 AMFE: -0.636
GC content
%: 42.946
Zmays_Zm00001d002239_T101
Zm00001d002239_T101
Low No 5790 [69]
Coding potential...
Type: noncoding Potential: -1.059
Folding energies...
MFEI: -27.380 AMFE: -0.638
GC content
%: 42.919
Zmays_Zm00001d002239_T102
Zm00001d002239_T102
Low No 3008 [70]
Coding potential...
Type: noncoding Potential: -1.047
Folding energies...
MFEI: -30.928 AMFE: -0.639
GC content
%: 48.404
Zmays_Zm00001d002239_T103
Zm00001d002239_T103
Low No 5327 [71]
Coding potential...
Type: noncoding Potential: -1.056
Folding energies...
MFEI: -27.612 AMFE: -0.639
GC content
%: 43.233
Zmays_Zm00001d002239_T104
Zm00001d002239_T104
Low No 4848 [72]
Coding potential...
Type: noncoding Potential: -1.053
Folding energies...
MFEI: -27.279 AMFE: -0.643
GC content
%: 42.430
Zmays_Zm00001d002239_T105
Zm00001d002239_T105
Low No 5937 [73]
Coding potential...
Type: noncoding Potential: -1.060
Folding energies...
MFEI: -27.187 AMFE: -0.630
GC content
%: 43.187
Zmays_Zm00001d002239_T106
Zm00001d002239_T106
High No 870 [74]
Coding potential...
Type: noncoding Potential: -0.993
Folding energies...
MFEI: -28.897 AMFE: -0.632
GC content
%: 45.747
Zmays_Zm00001d002239_T107
Zm00001d002239_T107
Low No 5803 [75]
Coding potential...
Type: noncoding Potential: -1.059
Folding energies...
MFEI: -27.126 AMFE: -0.632
GC content
%: 42.892
Zmays_Zm00001d002239_T109
Zm00001d002239_T109
Low No 6542 [76]
Coding potential...
Type: noncoding Potential: -1.063
Folding energies...
MFEI: -27.348 AMFE: -0.636
GC content
%: 43.030
Zmays_Zm00001d002239_T111
Zm00001d002239_T111
Low No 6297 [77]
Coding potential...
Type: noncoding Potential: -0.952
Folding energies...
MFEI: -27.159 AMFE: -0.641
GC content
%: 42.338
Zmays_Zm00001d002239_T112
Zm00001d002239_T112
Low No 5764 [78]
Coding potential...
Type: noncoding Potential: -1.059
Folding energies...
MFEI: -27.292 AMFE: -0.639
GC content
%: 42.696
Zmays_Zm00001d002239_T113
Zm00001d002239_T113
Low No 5858 [79]
Coding potential...
Type: noncoding Potential: -1.059
Folding energies...
MFEI: -27.453 AMFE: -0.634
GC content
%: 43.291
Zmays_Zm00001d002239_T117
Zm00001d002239_T117
Low No 5094 [80]
Coding potential...
Type: noncoding Potential: -1.055
Folding energies...
MFEI: -27.831 AMFE: -0.639
GC content
%: 43.581
Zmays_Zm00001d002239_T118
Zm00001d002239_T118
Low No 6626 [81]
Coding potential...
Type: noncoding Potential: -1.063
Folding energies...
MFEI: -27.170 AMFE: -0.639
GC content
%: 42.529
Zmays_Zm00001d002239_T119
Zm00001d002239_T119
Low No 5676 [82]
Coding potential...
Type: noncoding Potential: -1.058
Folding energies...
MFEI: -27.311 AMFE: -0.634
GC content
%: 43.094
Zmays_Zm00001d002239_T120
Zm00001d002239_T120
Low No 3006 [83]
Coding potential...
Type: noncoding Potential: -1.072
Folding energies...
MFEI: -31.055 AMFE: -0.635
GC content
%: 48.935
Zmays_Zm00001d002239_T121
Zm00001d002239_T121
Low No 5374 [84]
Coding potential...
Type: noncoding Potential: -1.056
Folding energies...
MFEI: -26.072 AMFE: -0.647
GC content
%: 40.268
Zmays_Zm00001d002239_T122
Zm00001d002239_T122
Low No 6916 [85]
Coding potential...
Type: noncoding Potential: -1.064
Folding energies...
MFEI: -27.005 AMFE: -0.648
GC content
%: 41.657
Zmays_Zm00001d002239_T123
Zm00001d002239_T123
Low No 5861 [86]
Coding potential...
Type: noncoding Potential: -1.137
Folding energies...
MFEI: -27.482 AMFE: -0.638
GC content
%: 43.098
Zmays_Zm00001d002239_T124
Zm00001d002239_T124
Low No 6008 [87]
Coding potential...
Type: noncoding Potential: -1.060
Folding energies...
MFEI: -27.562 AMFE: -0.637
GC content
%: 43.276
Zmays_Zm00001d002239_T125
Zm00001d002239_T125
Low No 3995 [88]
Coding potential...
Type: noncoding Potential: -1.061
Folding energies...
MFEI: -30.070 AMFE: -0.634
GC content
%: 47.434
Zmays_Zm00001d002239_T127
Zm00001d002239_T127
Low No 5824 [89]
Coding potential...
Type: noncoding Potential: -1.059
Folding energies...
MFEI: -26.933 AMFE: -0.645
GC content
%: 41.758
Zmays_Zm00001d002239_T129
Zm00001d002239_T129
Low No 5830 [90]
Coding potential...
Type: noncoding Potential: -1.059
Folding energies...
MFEI: -27.328 AMFE: -0.636
GC content
%: 42.950
Zmays_Zm00001d002239_T131
Zm00001d002239_T131
Low No 5297 [91]
Coding potential...
Type: noncoding Potential: -1.056
Folding energies...
MFEI: -25.860 AMFE: -0.644
GC content
%: 40.136
Zmays_Zm00001d002239_T132
Zm00001d002239_T132
Low No 5792 [92]
Coding potential...
Type: noncoding Potential: -1.059
Folding energies...
MFEI: -26.445 AMFE: -0.639
GC content
%: 41.385
Zmays_Zm00001d002239_T133
Zm00001d002239_T133
Low No 6051 [93]
Coding potential...
Type: noncoding Potential: -1.060
Folding energies...
MFEI: -27.587 AMFE: -0.633
GC content
%: 43.563
Zmays_Zm00001d002239_T135
Zm00001d002239_T135
Low No 5439 [94]
Coding potential...
Type: noncoding Potential: -1.057
Folding energies...
MFEI: -26.531 AMFE: -0.640
GC content
%: 41.441
Zmays_Zm00001d002239_T136
Zm00001d002239_T136
Low No 5926 [95]
Coding potential...
Type: noncoding Potential: -1.060
Folding energies...
MFEI: -27.369 AMFE: -0.638
GC content
%: 42.913
Zmays_Zm00001d002239_T138
Zm00001d002239_T138
Low No 6308 [96]
Coding potential...
Type: noncoding Potential: -1.062
Folding energies...
MFEI: -27.506 AMFE: -0.634
GC content
%: 43.358
Zmays_Zm00001d002239_T140
Zm00001d002239_T140
Low No 5788 [97]
Coding potential...
Type: noncoding Potential: -1.006
Folding energies...
MFEI: -26.593 AMFE: -0.646
GC content
%: 41.154
Zmays_Zm00001d002239_T141
Zm00001d002239_T141
Low No 5737 [98]
Coding potential...
Type: noncoding Potential: -1.059
Folding energies...
MFEI: -26.917 AMFE: -0.632
GC content
%: 42.618
Zmays_Zm00001d002239_T143
Zm00001d002239_T143
Low No 6209 [99]
Coding potential...
Type: noncoding Potential: -1.061
Folding energies...
MFEI: -27.198 AMFE: -0.629
GC content
%: 43.244
Zmays_Zm00001d002239_T144
Zm00001d002239_T144
High No 876 [100]
Coding potential...
Type: noncoding Potential: -1.187
Folding energies...
MFEI: -29.600 AMFE: -0.650
GC content
%: 45.548
Zmays_Zm00001d002239_T145
Zm00001d002239_T145
Low No 5815 [101]
Coding potential...
Type: noncoding Potential: -1.059
Folding energies...
MFEI: -26.917 AMFE: -0.627
GC content
%: 42.906
Zmays_Zm00001d002239_T147
Zm00001d002239_T147
Low No 2160 [102]
Coding potential...
Type: noncoding Potential: -1.059
Folding energies...
MFEI: -27.384 AMFE: -0.640
GC content
%: 42.778
Zmays_Zm00001d002239_T148
Zm00001d002239_T148
Low No 3649 [103]
Coding potential...
Type: noncoding Potential: -1.096
Folding energies...
MFEI: -29.235 AMFE: -0.632
GC content
%: 46.259
Zmays_Zm00001d002239_T149
Zm00001d002239_T149
Low No 3900 [104]
Coding potential...
Type: noncoding Potential: -1.099
Folding energies...
MFEI: -29.633 AMFE: -0.628
GC content
%: 47.154
Zmays_Zm00001d002239_T150
Zm00001d002239_T150
Low No 6134 [105]
Coding potential...
Type: noncoding Potential: -1.061
Folding energies...
MFEI: -27.315 AMFE: -0.629
GC content
%: 43.446
Zmays_Zm00001d002239_T152
Zm00001d002239_T152
Low No 3577 [106]
Coding potential...
Type: noncoding Potential: -1.103
Folding energies...
MFEI: -29.416 AMFE: -0.623
GC content
%: 47.190
Zmays_Zm00001d002239_T154
Zm00001d002239_T154
Low No 5585 [107]
Coding potential...
Type: noncoding Potential: -1.058
Folding energies...
MFEI: -26.591 AMFE: -0.644
GC content
%: 41.289
Zmays_Zm00001d002239_T155
Zm00001d002239_T155
Low No 6239 [108]
Coding potential...
Type: noncoding Potential: -1.061
Folding energies...
MFEI: -26.721 AMFE: -0.639
GC content
%: 41.802
Zmays_Zm00001d002239_T156
Zm00001d002239_T156
Low No 6312 [109]
Coding potential...
Type: noncoding Potential: -1.062
Folding energies...
MFEI: -26.999 AMFE: -0.636
GC content
%: 42.459
Zmays_Zm00001d002239_T157
Zm00001d002239_T157
Low No 2352 [110]
Coding potential...
Type: noncoding Potential: -1.030
Folding energies...
MFEI: -28.780 AMFE: -0.663
GC content
%: 43.410
Zmays_Zm00001d002239_T158
Zm00001d002239_T158
Low No 5904 [111]
Coding potential...
Type: noncoding Potential: -1.059
Folding energies...
MFEI: -26.529 AMFE: -0.645
GC content
%: 41.108
Zmays_Zm00001d002239_T159
Zm00001d002239_T159
Low No 6332 [112]
Coding potential...
Type: noncoding Potential: -1.062
Folding energies...
MFEI: -26.701 AMFE: -0.638
GC content
%: 41.867
Zmays_Zm00001d002239_T161
Zm00001d002239_T161
Low No 5062 [113]
Coding potential...
Type: noncoding Potential: -1.054
Folding energies...
MFEI: -25.435 AMFE: -0.641
GC content
%: 39.708
Zmays_Zm00001d002239_T163
Zm00001d002239_T163
Low No 6018 [114]
Coding potential...
Type: noncoding Potential: -1.060
Folding energies...
MFEI: -26.967 AMFE: -0.628
GC content
%: 42.921
Zmays_Zm00001d002239_T167
Zm00001d002239_T167
Low No 3924 [115]
Coding potential...
Type: noncoding Potential: -1.044
Folding energies...
MFEI: -25.031 AMFE: -0.630
GC content
%: 39.730
Zmays_Zm00001d002239_T168
Zm00001d002239_T168
Low No 6125 [116]
Coding potential...
Type: noncoding Potential: -1.061
Folding energies...
MFEI: -25.050 AMFE: -0.645
GC content
%: 38.857
Zmays_Zm00001d002239_T169
Zm00001d002239_T169
Low No 4415 [117]
Coding potential...
Type: noncoding Potential: -1.049
Folding energies...
MFEI: -26.272 AMFE: -0.653
GC content
%: 40.249
Zmays_Zm00001d002239_T170
Zm00001d002239_T170
Low No 5641 [118]
Coding potential...
Type: noncoding Potential: -1.058
Folding energies...
MFEI: -26.761 AMFE: -0.642
GC content
%: 41.659
Zmays_Zm00001d002239_T171
Zm00001d002239_T171
Low No 2696 [119]
Coding potential...
Type: noncoding Potential: -1.040
Folding energies...
MFEI: -30.256 AMFE: -0.652
GC content
%: 46.402
Zmays_Zm00001d002239_T172
Zm00001d002239_T172
Low No 6150 [120]
Coding potential...
Type: noncoding Potential: -1.061
Folding energies...
MFEI: -27.072 AMFE: -0.632
GC content
%: 42.862
Zmays_Zm00001d002239_T173
Zm00001d002239_T173
Low No 2900 [121]
Coding potential...
Type: noncoding Potential: -1.027
Folding energies...
MFEI: -30.617 AMFE: -0.635
GC content
%: 48.207
Zmays_Zm00001d002239_T174
Zm00001d002239_T174
Low No 5815 [122]
Coding potential...
Type: noncoding Potential: -1.059
Folding energies...
MFEI: -27.157 AMFE: -0.627
GC content
%: 43.319
Zmays_Zm00001d002239_T176
Zm00001d002239_T176
Low No 2754 [123]
Coding potential...
Type: noncoding Potential: -1.153
Folding energies...
MFEI: -25.345 AMFE: -0.633
GC content
%: 40.051
Zmays_Zm00001d002239_T177
Zm00001d002239_T177
Low No 3602 [124]
Coding potential...
Type: noncoding Potential: -1.040
Folding energies...
MFEI: -25.600 AMFE: -0.648
GC content
%: 39.506
Zmays_Zm00001d002239_T178
Zm00001d002239_T178
Low No 5177 [125]
Coding potential...
Type: noncoding Potential: -1.055
Folding energies...
MFEI: -25.737 AMFE: -0.645
GC content
%: 39.927
Zmays_Zm00001d002239_T179
Zm00001d002239_T179
Low No 6145 [126]
Coding potential...
Type: noncoding Potential: -1.061
Folding energies...
MFEI: -26.986 AMFE: -0.629
GC content
%: 42.897
Zmays_Zm00001d002239_T180
Zm00001d002239_T180
Low No 6085 [127]
Coding potential...
Type: noncoding Potential: -1.060
Folding energies...
MFEI: -27.190 AMFE: -0.628
GC content
%: 43.320
Zmays_Zm00001d002239_T182
Zm00001d002239_T182
Low No 4796 [128]
Coding potential...
Type: noncoding Potential: -1.052
Folding energies...
MFEI: -27.389 AMFE: -0.631
GC content
%: 43.411
Zmays_Zm00001d002239_T184
Zm00001d002239_T184
Low No 3826 [129]
Coding potential...
Type: noncoding Potential: -1.042
Folding energies...
MFEI: -25.520 AMFE: -0.649
GC content
%: 39.310
Zmays_Zm00001d002239_T185
Zm00001d002239_T185
Low No 1861 [130]
Coding potential...
Type: noncoding Potential: -1.011
Folding energies...
MFEI: -28.404 AMFE: -0.644
GC content
%: 44.116
Zmays_Zm00001d002239_T186
Zm00001d002239_T186
Low No 5704 [131]
Coding potential...
Type: noncoding Potential: -1.058
Folding energies...
MFEI: -26.815 AMFE: -0.639
GC content
%: 41.971
Zmays_Zm00001d002239_T187
Zm00001d002239_T187
Low No 5811 [132]
Coding potential...
Type: noncoding Potential: -1.059
Folding energies...
MFEI: -27.047 AMFE: -0.620
GC content
%: 43.590
Zmays_Zm00001d002239_T189
Zm00001d002239_T189
Low No 5817 [133]
Coding potential...
Type: noncoding Potential: -1.059
Folding energies...
MFEI: -27.062 AMFE: -0.629
GC content
%: 43.012
Zmays_Zm00001d002239_T190
Zm00001d002239_T190
Low No 5855 [134]
Coding potential...
Type: noncoding Potential: -1.059
Folding energies...
MFEI: -27.021 AMFE: -0.627
GC content
%: 43.108
Zmays_Zm00001d002239_T191
Zm00001d002239_T191
Low No 5386 [135]
Coding potential...
Type: noncoding Potential: -1.056
Folding energies...
MFEI: -27.205 AMFE: -0.633
GC content
%: 42.945
Zmays_Zm00001d002239_T192
Zm00001d002239_T192
Low No 2801 [136]
Coding potential...
Type: noncoding Potential: -1.064
Folding energies...
MFEI: -30.278 AMFE: -0.632
GC content
%: 47.876
Zmays_Zm00001d002239_T194
Zm00001d002239_T194
Low No 5289 [137]
Coding potential...
Type: noncoding Potential: -1.217
Folding energies...
MFEI: -25.850 AMFE: -0.642
GC content
%: 40.291
Zmays_Zm00001d002239_T195
Zm00001d002239_T195
Low No 4887 [138]
Coding potential...
Type: noncoding Potential: -1.053
Folding energies...
MFEI: -27.635 AMFE: -0.634
GC content
%: 43.585
Zmays_Zm00001d002239_T196
Zm00001d002239_T196
Low No 5494 [139]
Coding potential...
Type: noncoding Potential: -1.057
Folding energies...
MFEI: -27.372 AMFE: -0.631
GC content
%: 43.393
Zmays_Zm00001d002239_T197
Zm00001d002239_T197
Low No 5140 [140]
Coding potential...
Type: noncoding Potential: -1.055
Folding energies...
MFEI: -25.589 AMFE: -0.643
GC content
%: 39.825
Zmays_Zm00001d002239_T198
Zm00001d002239_T198
Low No 5672 [141]
Coding potential...
Type: noncoding Potential: -1.058
Folding energies...
MFEI: -27.530 AMFE: -0.628
GC content
%: 43.847
Zmays_Zm00001d002239_T199
Zm00001d002239_T199
Low No 1835 [142]
Coding potential...
Type: noncoding Potential: -1.010
Folding energies...
MFEI: -28.376 AMFE: -0.641
GC content
%: 44.251
Zmays_Zm00001d002239_T200
Zm00001d002239_T200
Low No 5956 [143]
Coding potential...
Type: noncoding Potential: -1.060
Folding energies...
MFEI: -25.447 AMFE: -0.649
GC content
%: 39.204
Zmays_Zm00001d002239_T201
Zm00001d002239_T201
Low No 5647 [144]
Coding potential...
Type: noncoding Potential: -1.016
Folding energies...
MFEI: -26.632 AMFE: -0.642
GC content
%: 41.509
Zmays_Zm00001d002239_T202
Zm00001d002239_T202
Low No 5694 [145]
Coding potential...
Type: noncoding Potential: -1.058
Folding energies...
MFEI: -27.331 AMFE: -0.630
GC content
%: 43.379
Zmays_Zm00001d002239_T203
Zm00001d002239_T203
Low No 5877 [146]
Coding potential...
Type: noncoding Potential: -1.059
Folding energies...
MFEI: -25.658 AMFE: -0.647
GC content
%: 39.646
Zmays_Zm00001d002239_T204
Zm00001d002239_T204
Low No 5074 [147]
Coding potential...
Type: noncoding Potential: -1.054
Folding energies...
MFEI: -27.377 AMFE: -0.635
GC content
%: 43.142
Zmays_Zm00001d002239_T205
Zm00001d002239_T205
Low No 5579 [148]
Coding potential...
Type: noncoding Potential: -1.058
Folding energies...
MFEI: -26.960 AMFE: -0.630
GC content
%: 42.821
Zmays_Zm00001d002239_T206
Zm00001d002239_T206
Low No 5387 [149]
Coding potential...
Type: noncoding Potential: -1.035
Folding energies...
MFEI: -26.996 AMFE: -0.632
GC content
%: 42.695
Zmays_Zm00001d002239_T207
Zm00001d002239_T207
Low No 4819 [150]
Coding potential...
Type: noncoding Potential: -1.052
Folding energies...
MFEI: -25.240 AMFE: -0.637
GC content
%: 39.593
Zmays_Zm00001d002239_T208
Zm00001d002239_T208
Low No 2482 [151]
Coding potential...
Type: noncoding Potential: -1.034
Folding energies...
MFEI: -28.832 AMFE: -0.653
GC content
%: 44.158
Zmays_Zm00001d002239_T209
Zm00001d002239_T209
Low No 5408 [152]
Coding potential...
Type: noncoding Potential: -1.057
Folding energies...
MFEI: -26.241 AMFE: -0.648
GC content
%: 40.514
Zmays_Zm00001d002239_T211
Zm00001d002239_T211
Low No 2811 [153]
Coding potential...
Type: noncoding Potential: -1.043
Folding energies...
MFEI: -30.765 AMFE: -0.632
GC content
%: 48.702
Zmays_Zm00001d002239_T212
Zm00001d002239_T212
Low No 5537 [154]
Coding potential...
Type: noncoding Potential: -0.930
Folding energies...
MFEI: -27.405 AMFE: -0.635
GC content
%: 43.164
Zmays_Zm00001d002239_T213
Zm00001d002239_T213
Low No 4324 [155]
Coding potential...
Type: noncoding Potential: -1.125
Folding energies...
MFEI: -25.136 AMFE: -0.656
GC content
%: 38.321
Zmays_Zm00001d002239_T214
Zm00001d002239_T214
Low No 4566 [156]
Coding potential...
Type: noncoding Potential: -1.050
Folding energies...
MFEI: -24.985 AMFE: -0.635
GC content
%: 39.356
Zmays_Zm00001d002239_T215
Zm00001d002239_T215
Low No 5651 [157]
Coding potential...
Type: noncoding Potential: -1.220
Folding energies...
MFEI: -26.786 AMFE: -0.639
GC content
%: 41.904
Zmays_Zm00001d002239_T216
Zm00001d002239_T216
Low No 4690 [158]
Coding potential...
Type: noncoding Potential: -1.051
Folding energies...
MFEI: -27.618 AMFE: -0.640
GC content
%: 43.134
Zmays_Zm00001d002239_T217
Zm00001d002239_T217
Low No 6699 [159]
Coding potential...
Type: noncoding Potential: -1.063
Folding energies...
MFEI: -26.741 AMFE: -0.635
GC content
%: 42.096
Zmays_Zm00001d002239_T218
Zm00001d002239_T218
Low No 5445 [160]
Coding potential...
Type: noncoding Potential: -1.057
Folding energies...
MFEI: -27.513 AMFE: -0.628
GC content
%: 43.783
Zmays_Zm00001d002239_T219
Zm00001d002239_T219
Low No 5772 [161]
Coding potential...
Type: noncoding Potential: -1.059
Folding energies...
MFEI: -27.176 AMFE: -0.628
GC content
%: 43.261
Zmays_Zm00001d002239_T220
Zm00001d002239_T220
Low No 4850 [162]
Coding potential...
Type: noncoding Potential: -1.053
Folding energies...
MFEI: -27.788 AMFE: -0.633
GC content
%: 43.897
Zmays_Zm00001d002239_T222
Zm00001d002239_T222
Low No 3449 [163]
Coding potential...
Type: noncoding Potential: -1.037
Folding energies...
MFEI: -25.045 AMFE: -0.624
GC content
%: 40.128
Zmays_Zm00001d002239_T223
Zm00001d002239_T223
Low No 6621 [164]
Coding potential...
Type: noncoding Potential: -1.063
Folding energies...
MFEI: -25.498 AMFE: -0.655
GC content
%: 38.922
Zmays_Zm00001d002239_T224
Zm00001d002239_T224
Low No 5974 [165]
Coding potential...
Type: noncoding Potential: -1.060
Folding energies...
MFEI: -25.578 AMFE: -0.648
GC content
%: 39.488
Zmays_Zm00001d002239_T225
Zm00001d002239_T225
Low No 5290 [166]
Coding potential...
Type: noncoding Potential: -1.056
Folding energies...
MFEI: -26.008 AMFE: -0.642
GC content
%: 40.510
Zmays_Zm00001d002239_T226
Zm00001d002239_T226
Low No 5460 [167]
Coding potential...
Type: noncoding Potential: -1.057
Folding energies...
MFEI: -27.324 AMFE: -0.626
GC content
%: 43.626
Zmays_Zm00001d002239_T227
Zm00001d002239_T227
Low No 6230 [168]
Coding potential...
Type: noncoding Potential: -1.061
Folding energies...
MFEI: -26.469 AMFE: -0.633
GC content
%: 41.830
Zmays_Zm00001d002239_T228
Zm00001d002239_T228
Low No 4257 [169]
Coding potential...
Type: noncoding Potential: -1.086
Folding energies...
MFEI: -26.453 AMFE: -0.651
GC content
%: 40.639
Zmays_Zm00001d002239_T229
Zm00001d002239_T229
Low No 4797 [170]
Coding potential...
Type: noncoding Potential: -0.985
Folding energies...
MFEI: -27.542 AMFE: -0.638
GC content
%: 43.152
Zmays_Zm00001d002239_T230
Zm00001d002239_T230
Low No 6423 [171]
Coding potential...
Type: noncoding Potential: -1.062
Folding energies...
MFEI: -25.421 AMFE: -0.652
GC content
%: 38.985
Zmays_Zm00001d002239_T231
Zm00001d002239_T231
Low No 4993 [172]
Coding potential...
Type: noncoding Potential: -1.054
Folding energies...
MFEI: -25.239 AMFE: -0.637
GC content
%: 39.615
Zmays_Zm00001d002239_T232
Zm00001d002239_T232
Low No 4828 [173]
Coding potential...
Type: noncoding Potential: -1.052
Folding energies...
MFEI: -25.449 AMFE: -0.628
GC content
%: 40.514
Zmays_Zm00001d002239_T233
Zm00001d002239_T233
Low No 4322 [174]
Coding potential...
Type: noncoding Potential: -1.048
Folding energies...
MFEI: -25.708 AMFE: -0.604
GC content
%: 42.573
Zmays_Zm00001d002239_T234
Zm00001d002239_T234
Low No 2865 [175]
Coding potential...
Type: noncoding Potential: -1.026
Folding energies...
MFEI: -27.253 AMFE: -0.619
GC content
%: 44.049


Matches to external databases
Help.png

The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias Database Version Hit Evalue
Zmays_Zm00001d002239_T201  SwissProt 2021-04-01 Q9C5W7 2.97e-5
Zmays_Zm00001d002239_T075  SwissProt 2021-04-01 Q9C5W7 1.13e-5
Zmays_Zm00001d002239_T224  RepBase (RepeatMasker) 0000-00-00 RC/Helitron
Zmays_Zm00001d002239_T122  RepBase (RepeatMasker) 0000-00-00 RC/Helitron
Zmays_Zm00001d002239_T011  RepBase (RepeatMasker) 0000-00-00 RC/Helitron
Zmays_Zm00001d002239_T220  SwissProt 2021-04-01 Q9C5W7 2.51e-5
Zmays_Zm00001d002239_T103  SwissProt 2021-04-01 Q9C5W7 2.78e-5
Zmays_Zm00001d002239_T147  RepBase (RepeatMasker) 0000-00-00 RC/Helitron
Zmays_Zm00001d002239_T032  RepBase (RepeatMasker) 0000-00-00 RC/Helitron
Zmays_Zm00001d002239_T129  SwissProt 2021-04-01 Q9C5W7 3.07e-5
... further results
Gene models
Help.png

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Zmays_Zm00001d002239.png