GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Zmays_Zm00001d008583 [ Zm00001d008583]	8	13592273	13595123	v4	Zea mays (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Zmays_Zm00001d008583_T001 Zm00001d008583_T001	High	No	1789	[1]		Get ORF Coding potential... Type: noncoding Potential: -0.767 Folding energies... MFEI: -24.597 AMFE: -0.668 GC content %: 36.836
Zmays_Zm00001d008583_T002 Zm00001d008583_T002	High	No	1699	[2]		Get ORF Coding potential... Type: noncoding Potential: -0.758 Folding energies... MFEI: -24.293 AMFE: -0.663 GC content %: 36.669

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).