Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Zmays_Zm00001d010092 [ Zm00001d010092] |
8 | 99052052 | 99055878 | v4 | Zea mays (Phytozome 13) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Zmays_Zm00001d010092_T003 Zm00001d010092_T003 |
Low | No | 3466 | [1] | Get ORF Coding potential... Type: noncoding Potential: -0.185 Folding energies... MFEI: -27.989 AMFE: -0.645 GC content %: 43.393 | |
Zmays_Zm00001d010092_T005 Zm00001d010092_T005 |
Low | No | 3609 | [2] | Get ORF Coding potential... Type: noncoding Potential: -0.208 Folding energies... MFEI: -27.678 AMFE: -0.647 GC content %: 42.810 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Zmays_Zm00001d010092_T003 | SwissProt | 2021-04-01 | Q76CY8 | 2.77e-20 |
Zmays_Zm00001d010092_T005 | SwissProt | 2021-04-01 | Q6XZ79 | 5.95e-20 |