GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Zmays_Zm00001d011763 [ Zm00001d011763]	8	161020006	161022048	v4	Zea mays (Phytozome 13)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Zmays_Zm00001d011763_T003 Zm00001d011763_T003	High	No	814	[1]		Get ORF Coding potential... Type: noncoding Potential: -0.683 Folding energies... MFEI: -40.074 AMFE: -0.687 GC content %: 58.354
Zmays_Zm00001d011763_T004 Zm00001d011763_T004	High	No	1032	[2]		Get ORF Coding potential... Type: noncoding Potential: -0.746 Folding energies... MFEI: -36.386 AMFE: -0.685 GC content %: 53.101
Zmays_Zm00001d011763_T006 Zm00001d011763_T006	High	No	757	[3]		Get ORF Coding potential... Type: noncoding Potential: -0.569 Folding energies... MFEI: -39.749 AMFE: -0.692 GC content %: 57.464

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).