Zmays Zm00001d012156
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Zmays_Zm00001d012156 [ Zm00001d012156] |
8 | 169060792 | 169075234 | v4 | Zea mays (Phytozome 13) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Zmays_Zm00001d012156_T012 Zm00001d012156_T012 |
High | No | 2472 | [1] | Get ORF Coding potential... Type: noncoding Potential: -1.247 Folding energies... MFEI: -25.028 AMFE: -0.615 GC content %: 40.696 | |
| Zmays_Zm00001d012156_T019 Zm00001d012156_T019 |
High | No | 910 | [2] | Get ORF Coding potential... Type: noncoding Potential: -1.427 Folding energies... MFEI: -28.890 AMFE: -0.598 GC content %: 48.352 | |
| Zmays_Zm00001d012156_T020 Zm00001d012156_T020 |
High | No | 1732 | [3] | Get ORF Coding potential... Type: noncoding Potential: -1.096 Folding energies... MFEI: -23.349 AMFE: -0.559 GC content %: 41.801 | |
| Zmays_Zm00001d012156_T022 Zm00001d012156_T022 |
High | No | 806 | [4] | Get ORF Coding potential... Type: noncoding Potential: -1.374 Folding energies... MFEI: -29.901 AMFE: -0.598 GC content %: 50.000 | |
| Zmays_Zm00001d012156_T023 Zm00001d012156_T023 |
High | No | 689 | [5] | Get ORF Coding potential... Type: noncoding Potential: -1.351 Folding energies... MFEI: -31.582 AMFE: -0.634 GC content %: 49.782 | |
| Zmays_Zm00001d012156_T031 Zm00001d012156_T031 |
High | No | 226 | [6] | Get ORF Coding potential... Type: noncoding Potential: -1.477 Folding energies... MFEI: -12.168 AMFE: -0.331 GC content %: 36.726 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
