Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Zmays_Zm00001d013501 [ Zm00001d013501] |
5 | 12924588 | 12927450 | v4 | Zea mays (Phytozome 13) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Zmays_Zm00001d013501_T001 Zm00001d013501_T001 |
Low | No | 864 | [1] | Get ORF Coding potential... Type: noncoding Potential: -0.805 Folding energies... MFEI: -33.854 AMFE: -0.630 GC content %: 53.704 | |
Zmays_Zm00001d013501_T003 Zm00001d013501_T003 |
Low | No | 426 | [2] | Get ORF Coding potential... Type: noncoding Potential: -1.386 Folding energies... MFEI: -34.178 AMFE: -0.587 GC content %: 58.216 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Zmays_Zm00001d013501_T001 | SwissProt | 2021-04-01 | Q945M9 | 1.83e-10 |
Zmays_Zm00001d013501_T003 | SwissProt | 2021-04-01 | Q9LXV5 | 9.68e-9 |