GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Zmays_Zm00001d014508 [ Zm00001d014508]	5	50800690	50805243	v4	Zea mays (Phytozome 13)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Zmays_Zm00001d014508_T002 Zm00001d014508_T002	High	No	679	[1]		Get ORF Coding potential... Type: noncoding Potential: -1.251 Folding energies... MFEI: -29.175 AMFE: -0.591 GC content %: 49.337
Zmays_Zm00001d014508_T003 Zm00001d014508_T003	High	No	2290	[2]		Get ORF Coding potential... Type: noncoding Potential: -1.212 Folding energies... MFEI: -24.668 AMFE: -0.638 GC content %: 38.646
Zmays_Zm00001d014508_T004 Zm00001d014508_T004	High	No	2793	[3]		Get ORF Coding potential... Type: noncoding Potential: -0.529 Folding energies... MFEI: -24.990 AMFE: -0.650 GC content %: 38.417
Zmays_Zm00001d014508_T005 Zm00001d014508_T005	High	No	612	[4]		Get ORF Coding potential... Type: noncoding Potential: -1.159 Folding energies... MFEI: -26.716 AMFE: -0.615 GC content %: 43.464

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).