GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Zmays_Zm00001d016662 [ Zm00001d016662]	5	171759650	171775572	v4	Zea mays (Phytozome 13)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Zmays_Zm00001d016662_T001 Zm00001d016662_T001	High	No	756	[1]		Get ORF Coding potential... Type: noncoding Potential: -0.800 Folding energies... MFEI: -31.429 AMFE: -0.630 GC content %: 49.868
Zmays_Zm00001d016662_T005 Zm00001d016662_T005	High	No	359	[2]		Get ORF Coding potential... Type: noncoding Potential: -0.736 Folding energies... MFEI: -53.900 AMFE: -0.725 GC content %: 74.373
Zmays_Zm00001d016662_T006 Zm00001d016662_T006	High	No	608	[3]		Get ORF Coding potential... Type: noncoding Potential: -0.937 Folding energies... MFEI: -49.112 AMFE: -0.703 GC content %: 69.901

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).