Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Zmays_Zm00001d021335 [ Zm00001d021335] |
7 | 149129974 | 149134091 | v4 | Zea mays (Phytozome 13) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Zmays_Zm00001d021335_T004 Zm00001d021335_T004 |
Low | No | 2851 | [1] | Get ORF Coding potential... Type: noncoding Potential: -0.690 Folding energies... MFEI: -29.162 AMFE: -0.679 GC content %: 42.967 | |
Zmays_Zm00001d021335_T005 Zm00001d021335_T005 |
Low | No | 3549 | [2] | Get ORF Coding potential... Type: noncoding Potential: -1.040 Folding energies... MFEI: -28.397 AMFE: -0.699 GC content %: 40.631 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Zmays_Zm00001d021335_T004 | SwissProt | 2021-04-01 | O94285 | 4.9e-5 |
Zmays_Zm00001d021335_T005 | SwissProt | 2021-04-01 | Q9D2C6 | 2.95e-8 |
Zmays_Zm00001d021335_T004 | RepBase (RepeatMasker) | 0000-00-00 | LINE/L1 | |
Zmays_Zm00001d021335_T005 | RepBase (RepeatMasker) | 0000-00-00 | LINE/L1 |