Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Zmays_Zm00001d024612 [ Zm00001d024612] |
10 | 80319653 | 80328964 | v4 | Zea mays (Phytozome 13) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Zmays_Zm00001d024612_T021 Zm00001d024612_T021 |
Low | No | 5317 | [1] | Get ORF Coding potential... Type: noncoding Potential: -0.004 Folding energies... MFEI: -26.904 AMFE: -0.645 GC content %: 41.734 | |
Zmays_Zm00001d024612_T038 Zm00001d024612_T038 |
Low | No | 5727 | [2] | Get ORF Coding potential... Type: noncoding Potential: -0.293 Folding energies... MFEI: -26.551 AMFE: -0.650 GC content %: 40.877 | |
Zmays_Zm00001d024612_T044 Zm00001d024612_T044 |
Low | No | 4558 | [3] | Get ORF Coding potential... Type: noncoding Potential: -0.157 Folding energies... MFEI: -27.214 AMFE: -0.652 GC content %: 41.729 | |
Zmays_Zm00001d024612_T045 Zm00001d024612_T045 |
Low | No | 4812 | [4] | Get ORF Coding potential... Type: noncoding Potential: -0.072 Folding energies... MFEI: -27.255 AMFE: -0.654 GC content %: 41.687 | |
Zmays_Zm00001d024612_T052 Zm00001d024612_T052 |
Low | No | 5255 | [5] | Get ORF Coding potential... Type: noncoding Potential: -0.108 Folding energies... MFEI: -26.839 AMFE: -0.657 GC content %: 40.856 | |
Zmays_Zm00001d024612_T055 Zm00001d024612_T055 |
Low | No | 4740 | [6] | Get ORF Coding potential... Type: noncoding Potential: -0.022 Folding energies... MFEI: -27.291 AMFE: -0.657 GC content %: 41.540 | |
Zmays_Zm00001d024612_T059 Zm00001d024612_T059 |
Low | No | 4484 | [7] | Get ORF Coding potential... Type: noncoding Potential: -0.178 Folding energies... MFEI: -26.719 AMFE: -0.656 GC content %: 40.700 | |
Zmays_Zm00001d024612_T063 Zm00001d024612_T063 |
Low | No | 5331 | [8] | Get ORF Coding potential... Type: noncoding Potential: -0.005 Folding energies... MFEI: -26.762 AMFE: -0.655 GC content %: 40.874 | |
Zmays_Zm00001d024612_T066 Zm00001d024612_T066 |
Low | No | 3761 | [9] | Get ORF Coding potential... Type: noncoding Potential: -0.247 Folding energies... MFEI: -26.169 AMFE: -0.655 GC content %: 39.963 | |
Zmays_Zm00001d024612_T067 Zm00001d024612_T067 |
Low | No | 3488 | [10] | Get ORF Coding potential... Type: noncoding Potential: -0.227 Folding energies... MFEI: -25.536 AMFE: -0.659 GC content %: 38.733 | |
Zmays_Zm00001d024612_T069 Zm00001d024612_T069 |
Low | No | 566 | [11] | Get ORF Coding potential... Type: noncoding Potential: -0.138 Folding energies... MFEI: -23.180 AMFE: -0.566 GC content %: 40.989 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Zmays_Zm00001d024612_T066 | SwissProt | 2021-04-01 | F4K2A1 | 1.16e-9 |
Zmays_Zm00001d024612_T045 | SwissProt | 2021-04-01 | Q8LJW3 | 2.16e-17 |
Zmays_Zm00001d024612_T066 | RepBase (RepeatMasker) | 0000-00-00 | SINE/tRNA | |
Zmays_Zm00001d024612_T045 | RepBase (RepeatMasker) | 0000-00-00 | SINE/tRNA | |
Zmays_Zm00001d024612_T067 | SwissProt | 2021-04-01 | F4K2A1 | 1.05e-9 |
Zmays_Zm00001d024612_T052 | SwissProt | 2021-04-01 | F4K2A1 | 5.84e-10 |
Zmays_Zm00001d024612_T067 | RepBase (RepeatMasker) | 0000-00-00 | SINE/tRNA | |
Zmays_Zm00001d024612_T052 | RepBase (RepeatMasker) | 0000-00-00 | LTR | |
Zmays_Zm00001d024612_T069 | SwissProt | 2021-04-01 | Q9SDG8 | 1.61e-11 |
Zmays_Zm00001d024612_T055 | SwissProt | 2021-04-01 | Q8LJW3 | 2.08e-17 |
... further results