Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Zmays_Zm00001d026319 [ Zm00001d026319] |
10 | 143558820 | 143563786 | v4 | Zea mays (Phytozome 13) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Zmays_Zm00001d026319_T001 Zm00001d026319_T001 |
High | No | 659 | [1] | Get ORF Coding potential... Type: noncoding Potential: -0.482 Folding energies... MFEI: -28.058 AMFE: -0.638 GC content %: 44.006 | |
Zmays_Zm00001d026319_T002 Zm00001d026319_T002 |
High | No | 1005 | [2] | Get ORF Coding potential... Type: noncoding Potential: -0.600 Folding energies... MFEI: -34.000 AMFE: -0.619 GC content %: 54.925 | |
Zmays_Zm00001d026319_T003 Zm00001d026319_T003 |
High | No | 1071 | [3] | Get ORF Coding potential... Type: noncoding Potential: -0.616 Folding energies... MFEI: -33.697 AMFE: -0.604 GC content %: 55.836 |