GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Zmays_Zm00001d033402 [ Zm00001d033402]	1	261930159	261931759	v4	Zea mays (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Zmays_Zm00001d033402_T001 Zm00001d033402_T001	High	No	696	[1]		Get ORF Coding potential... Type: noncoding Potential: -0.922 Folding energies... MFEI: -40.490 AMFE: -0.649 GC content %: 62.356
Zmays_Zm00001d033402_T002 Zm00001d033402_T002	High	No	884	[2]		Get ORF Coding potential... Type: noncoding Potential: -0.814 Folding energies... MFEI: -41.369 AMFE: -0.653 GC content %: 63.348

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).