Zmays Zm00001d035988
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Zmays_Zm00001d035988 [ Zm00001d035988] |
6 | 64831967 | 64832901 | v4 | Zea mays (Phytozome 13) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Zmays_Zm00001d035988_T001 Zm00001d035988_T001 |
Low | No | 569 | [1] | Get ORF Coding potential... Type: coding Potential: 0.036 Folding energies... MFEI: -35.835 AMFE: -0.620 GC content %: 57.821 | |
| Zmays_Zm00001d035988_T004 Zm00001d035988_T004 |
Low | No | 560 | [2] | Get ORF Coding potential... Type: coding Potential: 0.023 Folding energies... MFEI: -36.250 AMFE: -0.627 GC content %: 57.857 | |
| Zmays_Zm00001d035988_T005 Zm00001d035988_T005 |
Low | No | 647 | [3] | Get ORF Coding potential... Type: coding Potential: 0.438 Folding energies... MFEI: -38.470 AMFE: -0.660 GC content %: 58.269 | |
| Zmays_Zm00001d035988_T006 Zm00001d035988_T006 |
High | No | 570 | [4] | Get ORF Coding potential... Type: noncoding Potential: -0.427 Folding energies... MFEI: -36.246 AMFE: -0.628 GC content %: 57.719 | |
| Zmays_Zm00001d035988_T007 Zm00001d035988_T007 |
High | No | 536 | [5] | Get ORF Coding potential... Type: noncoding Potential: -0.116 Folding energies... MFEI: -35.728 AMFE: -0.649 GC content %: 55.037 | |
| Zmays_Zm00001d035988_T008 Zm00001d035988_T008 |
High | No | 549 | [6] | Get ORF Coding potential... Type: noncoding Potential: -0.118 Folding energies... MFEI: -34.353 AMFE: -0.633 GC content %: 54.281 | |
| Zmays_Zm00001d035988_T009 Zm00001d035988_T009 |
High | No | 668 | [7] | Get ORF Coding potential... Type: noncoding Potential: -0.293 Folding energies... MFEI: -37.141 AMFE: -0.662 GC content %: 56.138 | |
| Zmays_Zm00001d035988_T010 Zm00001d035988_T010 |
High | No | 664 | [8] | Get ORF Coding potential... Type: noncoding Potential: -0.159 Folding energies... MFEI: -36.777 AMFE: -0.655 GC content %: 56.175 | |
| Zmays_Zm00001d035988_T011 Zm00001d035988_T011 |
High | No | 586 | [9] | Get ORF Coding potential... Type: noncoding Potential: -0.077 Folding energies... MFEI: -32.782 AMFE: -0.614 GC content %: 53.413 | |
| Zmays_Zm00001d035988_T012 Zm00001d035988_T012 |
Low | No | 723 | [10] | Get ORF Coding potential... Type: coding Potential: 0.227 Folding energies... MFEI: -39.806 AMFE: -0.674 GC content %: 59.059 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
