GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Zmays_Zm00001d038364 [ Zm00001d038364]	6	155605754	155607409	v4	Zea mays (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Zmays_Zm00001d038364_T001 Zm00001d038364_T001	Low	No	1297	[1]		Get ORF Coding potential... Type: coding Potential: 0.351 Folding energies... MFEI: -29.599 AMFE: -0.632 GC content %: 46.800
Zmays_Zm00001d038364_T002 Zm00001d038364_T002	High	No	446	[2]		Get ORF Coding potential... Type: noncoding Potential: -1.221 Folding energies... MFEI: -21.749 AMFE: -0.533 GC content %: 40.807

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).