Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Zmays_Zm00001d040372 [ Zm00001d040372] |
3 | 40547924 | 40552973 | v4 | Zea mays (Phytozome 13) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Zmays_Zm00001d040372_T003 Zm00001d040372_T003 |
High | No | 788 | [1] | Get ORF Coding potential... Type: noncoding Potential: -0.485 Folding energies... MFEI: -28.338 AMFE: -0.693 GC content %: 40.863 | |
Zmays_Zm00001d040372_T004 Zm00001d040372_T004 |
Low | No | 691 | [2] | Get ORF Coding potential... Type: noncoding Potential: -1.088 Folding energies... MFEI: -26.151 AMFE: -0.639 GC content %: 40.955 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Zmays_Zm00001d040372_T004 | RepBase (RepeatMasker) | 0000-00-00 | DNA/PIF-Harbinger |