GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Zmays_Zm00001d040543 [ Zm00001d040543]	3	48848940	48850629	v4	Zea mays (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Zmays_Zm00001d040543_T001 Zm00001d040543_T001	High	No	1513	[1]		Get ORF Coding potential... Type: noncoding Potential: -1.034 Folding energies... MFEI: -23.827 AMFE: -0.634 GC content %: 37.607
Zmays_Zm00001d040543_T002 Zm00001d040543_T002	High	No	1128	[2]		Get ORF Coding potential... Type: noncoding Potential: -1.058 Folding energies... MFEI: -25.142 AMFE: -0.637 GC content %: 39.450

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).