Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Zmays_Zm00001d044219 [ Zm00001d044219] |
3 | 222119675 | 222122409 | v4 | Zea mays (Phytozome 13) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Zmays_Zm00001d044219_T001 Zm00001d044219_T001 |
Low | No | 2610 | [1] | Get ORF Coding potential... Type: noncoding Potential: -0.541 Folding energies... MFEI: -32.230 AMFE: -0.676 GC content %: 47.701 | |
Zmays_Zm00001d044219_T002 Zm00001d044219_T002 |
Low | No | 2316 | [2] | Get ORF Coding potential... Type: noncoding Potential: -0.065 Folding energies... MFEI: -33.165 AMFE: -0.692 GC content %: 47.927 | |
Zmays_Zm00001d044219_T005 Zm00001d044219_T005 |
Low | No | 2272 | [3] | Get ORF Coding potential... Type: noncoding Potential: -0.063 Folding energies... MFEI: -32.602 AMFE: -0.685 GC content %: 47.579 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Zmays_Zm00001d044219_T001 | RepBase (RepeatMasker) | 0000-00-00 | SINE/tRNA | |
Zmays_Zm00001d044219_T002 | RepBase (RepeatMasker) | 0000-00-00 | SINE/tRNA | |
Zmays_Zm00001d044219_T005 | RepBase (RepeatMasker) | 0000-00-00 | SINE/tRNA |