GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Zmays_Zm00001d048957 [ Zm00001d048957]	4	10671837	10673065	v4	Zea mays (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Zmays_Zm00001d048957_T001 Zm00001d048957_T001	High	No	846	[1]		Get ORF Coding potential... Type: noncoding Potential: -0.268 Folding energies... MFEI: -33.463 AMFE: -0.622 GC content %: 53.783
Zmays_Zm00001d048957_T002 Zm00001d048957_T002	High	No	993	[2]		Get ORF Coding potential... Type: noncoding Potential: -0.513 Folding energies... MFEI: -33.545 AMFE: -0.634 GC content %: 52.870
Zmays_Zm00001d048957_T003 Zm00001d048957_T003	High	No	847	[3]		Get ORF Coding potential... Type: noncoding Potential: -0.487 Folding energies... MFEI: -34.817 AMFE: -0.631 GC content %: 55.136

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).