Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Zmays_Zm00001d053753 [ Zm00001d053753] |
4 | 240492305 | 240500796 | v4 | Zea mays (Phytozome 13) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Zmays_Zm00001d053753_T001 Zm00001d053753_T001 |
High | No | 589 | [1] | Get ORF Coding potential... Type: noncoding Potential: -1.118 Folding energies... MFEI: -33.413 AMFE: -0.645 GC content %: 51.783 | |
Zmays_Zm00001d053753_T002 Zm00001d053753_T002 |
Low | No | 391 | [2] | Get ORF Coding potential... Type: noncoding Potential: -0.037 Folding energies... MFEI: -36.317 AMFE: -0.609 GC content %: 59.591 | |
Zmays_Zm00001d053753_T005 Zm00001d053753_T005 |
High | No | 737 | [3] | Get ORF Coding potential... Type: noncoding Potential: -1.003 Folding energies... MFEI: -36.228 AMFE: -0.646 GC content %: 56.038 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Zmays_Zm00001d053753_T002 | SwissProt | 2021-04-01 | F4IPM3 | 8.13e-14 |