Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Zmays_Zm00001d054017 [ Zm00001d054017] |
4 | 245195523 | 245206342 | v4 | Zea mays (Phytozome 13) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Zmays_Zm00001d054017_T006 Zm00001d054017_T006 |
Low | No | 689 | [1] | Get ORF Coding potential... Type: noncoding Potential: -0.544 Folding energies... MFEI: -26.531 AMFE: -0.624 GC content %: 42.525 | |
Zmays_Zm00001d054017_T007 Zm00001d054017_T007 |
High | No | 604 | [2] | Get ORF Coding potential... Type: noncoding Potential: -0.981 Folding energies... MFEI: -24.023 AMFE: -0.592 GC content %: 40.563 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Zmays_Zm00001d054017_T006 | SwissProt | 2021-04-01 | Q2L6L1 | 1.94e-5 |