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Revision as of 14:18, 23 September 2015

A database of plants lncRNAs

Long non-coding RNAs (lncRNAs) are functional non-translated molecules longer than 200 nucleotides with diverse roles, such as chromatin modifications, transcriptional regulation, and conformational changes in proteins. The Green Non-Coding Database (GreeNC) is a repository of lncRNAs annotated in 45 plant species and 5 algae. By using the same pipeline to annotate lncRNAs and organizing them in a central database we aim to provide a tool for the scientific community that can boost the research on this class of transcripts. The GreeNC database provides information about sequence, genomic coordinates, coding potential and folding energy for all the identified lncRNAs.


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Latest news

Welcome to GreeNC!
Published on 21 November 2018 by Apaytuvi.
Welcome to the Green Non-Coding (GreeNC) database! GreeNC is the major resource of plant lncRNAs tod… Read more.
Tags: GreeNC
Minor update 1.12
Published on 19 September 2016 by Apaytuvi.
A recent minor update has been incorporated. Change-log:
  • lncRNAs containing undefined nucle… Read more.

All the news …

Statistics

Species Gene number Transcript number High confidence Repetitive elements miRNA precursors

Amborella_trichopoda 5698 5698 4156 103 347
Ananas_comosus 3376 3376 1674 163 935
Arabidopsis_lyrata 4363 4363 2622 158 60
Arabidopsis_thaliana 2752 3008 1720 1018 63
Brachypodium_distachyon 4828 5584 3648 870 1024
Capsella_grandiflora 1338 1394 1013 90 27
Capsella_rubella 1395 1458 1069 100 20
Carica_papaya 3986 3987 2439 980 181
Chlamydomonas_reinhardtii 583 619 135 217 450
Citrus_clementina 2056 2192 1553 149 34
Citrus_sinensis 2344 2562 1788 171 42
Coccomyxa_subellipsoidea_C-169 668 668 469 33 92
Cucumis_sativus 1817 1929 1390 152 32
Eucalyptus_grandis 4499 4639 3629 204 103
Eutrema_salsugineum 1588 1669 1238 85 25
Fragaria_vesca 3503 3503 2412 728 133
Glycine_max 5974 6689 4749 832 133
Gossypium_raimondii 3520 4216 3037 256 55
Linum_usitatissimum 2598 2598 1955 37 46
Malus_domestica 4126 4126 2565 688 83
Manihot_esculenta 3137 3468 2660 266 90
Medicago_truncatula 9373 9676 5793 2567 286
Micromonas_pusilla_CCMP1545 651 651 230 19 300
Micromonas_pusilla_RCC299 351 351 199 6 48
Mimulus_guttatus 2169 2333 1591 186 59
Musa_acuminata 4071 4071 2525 170 90
Oryza_sativa_Japonica_Group 4995 5237 3601 1148 119
Ostreococcus_lucimarinus 501 501 209 9 128
Phaseolus_vulgaris 1838 1946 1450 152 30
Physcomitrella_patens 6888 9690 8390 907 299
Populus_trichocarpa 4997 5569 4111 434 124
Prunus_persica 2803 3301 2216 526 85
Ricinus_communis 4198 4198 3127 174 215
Selaginella_moellendorffii 906 906 409 28 26
Setaria_italica 3240 3492 2159 507 669
Solanum_lycopersicum 3440 3440 2448 423 60
Solanum_tuberosum 5974 6680 2976 2682 184
Sorghum_bicolor 4624 5305 2682 1737 1057
Spirodela_polyrhiza 2111 2111 1536 86 174
Theobroma_cacao 4137 4268 3306 461 59
Triticum_aestivum 23359 38820 21132 5714 1039
Vitis_vinifera 2526 2526 1624 296 23
Volvox_carteri 1097 1134 592 222 371
Zea_mays 16857 18110 10229 4004 2192
Zostera_marina 1393 1393 1014 55 23