Difference between revisions of "Main Page"
From GreeNC
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<div id="main-plants" class="all-width"> | <div id="main-plants" class="all-width"> | ||
{{Main Plant|Amborella trichopoda|Amborella trichopoda.jpg}} | {{Main Plant|Amborella trichopoda|Amborella trichopoda.jpg}} | ||
| − | {{Main Plant|Aquilegia coerulea|Aquilegia coerulea.jpg}} | + | <!--{{Main Plant|Aquilegia coerulea|Aquilegia coerulea.jpg}}--> |
| − | {{Main Plant|Arabidopsis halleri|Arabidopsis halleri.jpg}} | + | <!--{{Main Plant|Arabidopsis halleri|Arabidopsis halleri.jpg}}--> |
{{Main Plant|Arabidopsis lyrata|Arabidopsis lyrata.jpg}} | {{Main Plant|Arabidopsis lyrata|Arabidopsis lyrata.jpg}} | ||
{{Main Plant|Arabidopsis thaliana|Arabidopsis thaliana.jpg}} | {{Main Plant|Arabidopsis thaliana|Arabidopsis thaliana.jpg}} | ||
| − | {{Main Plant|Boechera stricta|Boechera stricta.jpg}} | + | <!--{{Main Plant|Boechera stricta|Boechera stricta.jpg}}--> |
{{Main Plant|Brachypodium distachyon|Brachypodium distachyon.jpg}} | {{Main Plant|Brachypodium distachyon|Brachypodium distachyon.jpg}} | ||
| − | {{Main Plant|Brassica rapa|Brassica rapa.jpg}} | + | <!--{{Main Plant|Brassica rapa|Brassica rapa.jpg}}--> |
{{Main Plant|Capsella grandiflora|Capsella grandiflora.jpg}} | {{Main Plant|Capsella grandiflora|Capsella grandiflora.jpg}} | ||
{{Main Plant|Capsella rubella|Capsella rubella.jpg}} | {{Main Plant|Capsella rubella|Capsella rubella.jpg}} | ||
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{{Main Plant|Glycine max|Glycine max.jpg}} | {{Main Plant|Glycine max|Glycine max.jpg}} | ||
{{Main Plant|Gossypium raimondii|Gossypium raimondii.jpg}} | {{Main Plant|Gossypium raimondii|Gossypium raimondii.jpg}} | ||
| − | {{Main Plant|Kalanchoe laxiflora|Kalanchoe laxiflora.jpg}} | + | <!--{{Main Plant|Kalanchoe laxiflora|Kalanchoe laxiflora.jpg}}--> |
{{Main Plant|Linum usitatissimum|Linum usitatissimum.jpg}} | {{Main Plant|Linum usitatissimum|Linum usitatissimum.jpg}} | ||
{{Main Plant|Malus domestica|Malus domestica.jpg}} | {{Main Plant|Malus domestica|Malus domestica.jpg}} | ||
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{{Main Plant|Oryza sativa Japonica Group|Oryza sativa Japonica Group.jpg}} | {{Main Plant|Oryza sativa Japonica Group|Oryza sativa Japonica Group.jpg}} | ||
{{Main Plant|Ostreococcus lucimarinus|Ostreococcus lucimarinus.jpg}} | {{Main Plant|Ostreococcus lucimarinus|Ostreococcus lucimarinus.jpg}} | ||
| − | {{Main Plant|Panicum hallii|Panicum hallii.jpg}} | + | <!--{{Main Plant|Panicum hallii|Panicum hallii.jpg}}--> |
| − | {{Main Plant|Panicum virgatum|Panicum virgatum.jpg}} | + | <!--{{Main Plant|Panicum virgatum|Panicum virgatum.jpg}}--> |
{{Main Plant|Phaseolus vulgaris|Phaseolus vulgaris.jpg}} | {{Main Plant|Phaseolus vulgaris|Phaseolus vulgaris.jpg}} | ||
{{Main Plant|Physcomitrella patens|Physcomitrella patens.jpg}} | {{Main Plant|Physcomitrella patens|Physcomitrella patens.jpg}} | ||
| Line 42: | Line 42: | ||
{{Main Plant|Prunus persica|Prunus persica.jpg}} | {{Main Plant|Prunus persica|Prunus persica.jpg}} | ||
{{Main Plant|Ricinus communis|Ricinus communis.jpg}} | {{Main Plant|Ricinus communis|Ricinus communis.jpg}} | ||
| − | {{Main Plant|Salix purpurea|Salix purpurea.jpg}} | + | <!--{{Main Plant|Salix purpurea|Salix purpurea.jpg}}--> |
{{Main Plant|Selaginella moellendorffii|Selaginella moellendorffii.jpg}} | {{Main Plant|Selaginella moellendorffii|Selaginella moellendorffii.jpg}} | ||
{{Main Plant|Setaria italica|Setaria italica.jpg}} | {{Main Plant|Setaria italica|Setaria italica.jpg}} | ||
Revision as of 08:59, 28 September 2015
A database of plants lncRNAs
Long non-coding RNAs (lncRNAs) are functional non-translated molecules longer than 200 nucleotides with diverse roles, such as chromatin modifications, transcriptional regulation, and conformational changes in proteins. The Green Non-Coding Database (GreeNC) is a repository of lncRNAs annotated in 45 plant species and 5 algae. By using the same pipeline to annotate lncRNAs and organizing them in a central database we aim to provide a tool for the scientific community that can boost the research on this class of transcripts. The GreeNC database provides information about sequence, genomic coordinates, coding potential and folding energy for all the identified lncRNAs.
Latest news
Published on 21 November 2018 by Apaytuvi.
Welcome to the Green Non-Coding (GreeNC) database! GreeNC is the major resource of plant lncRNAs tod… Read more.
Published on 19 September 2016 by Apaytuvi.
A recent minor update has been incorporated. Change-log:
- lncRNAs containing undefined nucle… Read more.
All the news …
Statistics
| Species | Assembly | Gene number | Transcript number | High confidence | Repetitive elements | miRNA precursors
|
|---|---|---|---|---|---|---|
| Amborella_trichopoda | v1.0 | 5698 | 5698 | 4156 | 103 | 347 |
| Ananas_comosus | v3 | 3376 | 3376 | 1674 | 163 | 935 |
| Arabidopsis_lyrata | v1.0 | 4363 | 4363 | 2622 | 158 | 60 |
| Arabidopsis_thaliana | TAIR10 | 2752 | 3008 | 1720 | 1018 | 63 |
| Brachypodium_distachyon | v3.1 | 4828 | 5584 | 3648 | 870 | 1024 |
| Capsella_grandiflora | v1.1 | 1338 | 1394 | 1013 | 90 | 27 |
| Capsella_rubella | v1.0 | 1395 | 1458 | 1069 | 100 | 20 |
| Carica_papaya | ASGPBv0.4 | 3986 | 3987 | 2439 | 980 | 181 |
| Chlamydomonas_reinhardtii | v5.5 | 583 | 619 | 135 | 217 | 450 |
| Citrus_clementina | v1.0 | 2056 | 2192 | 1553 | 149 | 34 |
| Citrus_sinensis | v1.1 | 2344 | 2562 | 1788 | 171 | 42 |
| Coccomyxa_subellipsoidea_C-169 | v2.0 | 668 | 668 | 469 | 33 | 92 |
| Cucumis_sativus | v1.0 | 1817 | 1929 | 1390 | 152 | 32 |
| Eucalyptus_grandis | v2.0 | 4499 | 4639 | 3629 | 204 | 103 |
| Eutrema_salsugineum | v1.0 | 1588 | 1669 | 1238 | 85 | 25 |
| Fragaria_vesca | v1.1 | 3503 | 3503 | 2412 | 728 | 133 |
| Glycine_max | Wm82.a2.v1 | 5974 | 6689 | 4749 | 832 | 133 |
| Gossypium_raimondii | v2.1 | 3520 | 4216 | 3037 | 256 | 55 |
| Linum_usitatissimum | v1.0 | 2598 | 2598 | 1955 | 37 | 46 |
| Malus_domestica | v1.0 | 4126 | 4126 | 2565 | 688 | 83 |
| Manihot_esculenta | v6.1 | 3137 | 3468 | 2660 | 266 | 90 |
| Medicago_truncatula | Mt4.0v1 | 9373 | 9676 | 5793 | 2567 | 286 |
| Micromonas_pusilla_CCMP1545 | v3.0 | 651 | 651 | 230 | 19 | 300 |
| Micromonas_pusilla_RCC299 | v3.0 | 351 | 351 | 199 | 6 | 48 |
| Mimulus_guttatus | v2.0 | 2169 | 2333 | 1591 | 186 | 59 |
| Musa_acuminata | v1 | 4071 | 4071 | 2525 | 170 | 90 |
| Oryza_sativa_Japonica_Group | v7.0 | 4995 | 5237 | 3601 | 1148 | 119 |
| Ostreococcus_lucimarinus | v2.0 | 501 | 501 | 209 | 9 | 128 |
| Phaseolus_vulgaris | v1.0 | 1838 | 1946 | 1450 | 152 | 30 |
| Physcomitrella_patens | v3.3 | 6888 | 9690 | 8390 | 907 | 299 |
| Populus_trichocarpa | v3.0 | 4997 | 5569 | 4111 | 434 | 124 |
| Prunus_persica | v2.1 | 2803 | 3301 | 2216 | 526 | 85 |
| Ricinus_communis | v0.1 | 4198 | 4198 | 3127 | 174 | 215 |
| Selaginella_moellendorffii | v1.0 | 906 | 906 | 409 | 28 | 26 |
| Setaria_italica | v2.2 | 3240 | 3492 | 2159 | 507 | 669 |
| Solanum_lycopersicum | ITAG2.4 | 3440 | 3440 | 2448 | 423 | 60 |
| Solanum_tuberosum | v3.4 | 5974 | 6680 | 2976 | 2682 | 184 |
| Sorghum_bicolor | v3.1 | 4624 | 5305 | 2682 | 1737 | 1057 |
| Spirodela_polyrhiza | v2 | 2111 | 2111 | 1536 | 86 | 174 |
| Theobroma_cacao | v1.1 | 4137 | 4268 | 3306 | 461 | 59 |
| Triticum_aestivum | v2.2 | 23359 | 38820 | 21132 | 5714 | 1039 |
| Vitis_vinifera | Genoscope.12X | 2526 | 2526 | 1624 | 296 | 23 |
| Volvox_carteri | v2.1 | 1097 | 1134 | 592 | 222 | 371 |
| Zea_mays | 6a | 16857 | 18110 | 10229 | 4004 | 2192 |
| Zostera_marina | v2.2 | 1393 | 1393 | 1014 | 55 | 23 |