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Revision as of 14:16, 21 September 2015
A database of plants lncRNAs
Long non-coding RNAs (lncRNAs) are functional non-translated molecules longer than 200 nucleotides with diverse roles, such as chromatin modifications, transcriptional regulation, and conformational changes in proteins. The Green Non-Coding Database (GreeNC) is a database of plant lncRNAs that provide information about sequence, expression levels, genomic context, and ontology of lncRNAs in plants.
Last news
Published on 21 November 2018 by Apaytuvi.
Welcome to the Green Non-Coding (GreeNC) database! GreeNC is the major resource of plant lncRNAs tod… Read more.
Published on 19 September 2016 by Apaytuvi.
A recent minor update has been incorporated. Change-log:
- lncRNAs containing undefined nucle… Read more.
All the news …
Statistics
| Species | Gene number | Transcript number | High confidence | Repetitive elements | miRNA precursors
|
|---|---|---|---|---|---|
| Amborella_trichopoda | 5698 | 5698 | 4156 | 103 | 347 |
| Ananas_comosus | 3376 | 3376 | 1674 | 163 | 935 |
| Arabidopsis_lyrata | 4363 | 4363 | 2622 | 158 | 60 |
| Arabidopsis_thaliana | 2752 | 3008 | 1720 | 1018 | 63 |
| Brachypodium_distachyon | 4828 | 5584 | 3648 | 870 | 1024 |
| Capsella_grandiflora | 1338 | 1394 | 1013 | 90 | 27 |
| Capsella_rubella | 1395 | 1458 | 1069 | 100 | 20 |
| Carica_papaya | 3986 | 3987 | 2439 | 980 | 181 |
| Chlamydomonas_reinhardtii | 583 | 619 | 135 | 217 | 450 |
| Citrus_clementina | 2056 | 2192 | 1553 | 149 | 34 |
| Citrus_sinensis | 2344 | 2562 | 1788 | 171 | 42 |
| Coccomyxa_subellipsoidea_C-169 | 668 | 668 | 469 | 33 | 92 |
| Cucumis_sativus | 1817 | 1929 | 1390 | 152 | 32 |
| Eucalyptus_grandis | 4499 | 4639 | 3629 | 204 | 103 |
| Eutrema_salsugineum | 1588 | 1669 | 1238 | 85 | 25 |
| Fragaria_vesca | 3503 | 3503 | 2412 | 728 | 133 |
| Glycine_max | 5974 | 6689 | 4749 | 832 | 133 |
| Gossypium_raimondii | 3520 | 4216 | 3037 | 256 | 55 |
| Linum_usitatissimum | 2598 | 2598 | 1955 | 37 | 46 |
| Malus_domestica | 4126 | 4126 | 2565 | 688 | 83 |
| Manihot_esculenta | 3137 | 3468 | 2660 | 266 | 90 |
| Medicago_truncatula | 9373 | 9676 | 5793 | 2567 | 286 |
| Micromonas_pusilla_CCMP1545 | 651 | 651 | 230 | 19 | 300 |
| Micromonas_pusilla_RCC299 | 351 | 351 | 199 | 6 | 48 |
| Mimulus_guttatus | 2169 | 2333 | 1591 | 186 | 59 |
| Musa_acuminata | 4071 | 4071 | 2525 | 170 | 90 |
| Oryza_sativa_Japonica_Group | 4995 | 5237 | 3601 | 1148 | 119 |
| Ostreococcus_lucimarinus | 501 | 501 | 209 | 9 | 128 |
| Phaseolus_vulgaris | 1838 | 1946 | 1450 | 152 | 30 |
| Physcomitrella_patens | 6888 | 9690 | 8390 | 907 | 299 |
| Populus_trichocarpa | 4997 | 5569 | 4111 | 434 | 124 |
| Prunus_persica | 2803 | 3301 | 2216 | 526 | 85 |
| Ricinus_communis | 4198 | 4198 | 3127 | 174 | 215 |
| Selaginella_moellendorffii | 906 | 906 | 409 | 28 | 26 |
| Setaria_italica | 3240 | 3492 | 2159 | 507 | 669 |
| Solanum_lycopersicum | 3440 | 3440 | 2448 | 423 | 60 |
| Solanum_tuberosum | 5974 | 6680 | 2976 | 2682 | 184 |
| Sorghum_bicolor | 4624 | 5305 | 2682 | 1737 | 1057 |
| Spirodela_polyrhiza | 2111 | 2111 | 1536 | 86 | 174 |
| Theobroma_cacao | 4137 | 4268 | 3306 | 461 | 59 |
| Triticum_aestivum | 23359 | 38820 | 21132 | 5714 | 1039 |
| Vitis_vinifera | 2526 | 2526 | 1624 | 296 | 23 |
| Volvox_carteri | 1097 | 1134 | 592 | 222 | 371 |
| Zea_mays | 16857 | 18110 | 10229 | 4004 | 2192 |
| Zostera_marina | 1393 | 1393 | 1014 | 55 | 23 |