GreeNC

A database of plants lncRNAs

Amborella trichopoda

Aquilegia coerulea

Arabidopsis halleri

Arabidopsis lyrata

Arabidopsis thaliana

Boechera stricta

Brachypodium distachyon

Brassica rapa

Capsella grandiflora

Capsella rubella

Carica papaya

Chlamydomonas reinhardtii

Citrus clementina

Citrus sinensis

Coccomyxa subellipsoidea C-169

Cucumis sativus

Eucalyptus grandis

Eutrema salsugineum

Fragaria vesca

Glycine max

Gossypium raimondii

Kalanchoe laxiflora

Linum usitatissimum

Malus domestica

Manihot esculenta

Medicago truncatula

Micromonas pusilla CCMP1545

Micromonas pusilla RCC299

Mimulus guttatus

Musa acuminata

Oryza sativa Japonica Group

Ostreococcus lucimarinus

Panicum hallii

Panicum virgatum

Phaseolus vulgaris

Physcomitrella patens

Populus trichocarpa

Prunus persica

Ricinus communis

Salix purpurea

Selaginella moellendorffii

Setaria italica

Solanum lycopersicum

Solanum tuberosum

Sorghum bicolor

Spirodela polyrhiza

Theobroma cacao

Triticum aestivum

Vitis vinifera

Volvox carteri

Zea mays

Long non-coding RNAs (lncRNAs) are functional non-translated molecules longer than 200 nucleotides with diverse roles, such as chromatin modifications, transcriptional regulation, and conformational changes in proteins. The Green Non-Coding Database (GreeNC) is a database of plant lncRNAs that provide information about sequence, expression levels, genomic context, and ontology of lncRNAs in plants.

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Last news

Welcome to GreeNC!

Published on 21 November 2018 by Apaytuvi.

Welcome to the Green Non-Coding (GreeNC) database! GreeNC is the major resource of plant lncRNAs tod… Read more.

Tags: GreeNC

Minor update 1.12

Published on 19 September 2016 by Apaytuvi.

A recent minor update has been incorporated. Change-log:

• lncRNAs containing undefined nucle… Read more.

Tags: GreeNC, Minorupdate, Update

All the news …

Statistics

Species	Gene number	Transcript number	High confidence	Repetitive elements	miRNA precursors
Amborella_trichopoda	5698	5698	4156	103	347
Ananas_comosus	3376	3376	1674	163	935
Arabidopsis_lyrata	4363	4363	2622	158	60
Arabidopsis_thaliana	2752	3008	1720	1018	63
Brachypodium_distachyon	4828	5584	3648	870	1024
Capsella_grandiflora	1338	1394	1013	90	27
Capsella_rubella	1395	1458	1069	100	20
Carica_papaya	3986	3987	2439	980	181
Chlamydomonas_reinhardtii	583	619	135	217	450
Citrus_clementina	2056	2192	1553	149	34
Citrus_sinensis	2344	2562	1788	171	42
Coccomyxa_subellipsoidea_C-169	668	668	469	33	92
Cucumis_sativus	1817	1929	1390	152	32
Eucalyptus_grandis	4499	4639	3629	204	103
Eutrema_salsugineum	1588	1669	1238	85	25
Fragaria_vesca	3503	3503	2412	728	133
Glycine_max	5974	6689	4749	832	133
Gossypium_raimondii	3520	4216	3037	256	55
Linum_usitatissimum	2598	2598	1955	37	46
Malus_domestica	4126	4126	2565	688	83
Manihot_esculenta	3137	3468	2660	266	90
Medicago_truncatula	9373	9676	5793	2567	286
Micromonas_pusilla_CCMP1545	651	651	230	19	300
Micromonas_pusilla_RCC299	351	351	199	6	48
Mimulus_guttatus	2169	2333	1591	186	59
Musa_acuminata	4071	4071	2525	170	90
Oryza_sativa_Japonica_Group	4995	5237	3601	1148	119
Ostreococcus_lucimarinus	501	501	209	9	128
Phaseolus_vulgaris	1838	1946	1450	152	30
Physcomitrella_patens	6888	9690	8390	907	299
Populus_trichocarpa	4997	5569	4111	434	124
Prunus_persica	2803	3301	2216	526	85
Ricinus_communis	4198	4198	3127	174	215
Selaginella_moellendorffii	906	906	409	28	26
Setaria_italica	3240	3492	2159	507	669
Solanum_lycopersicum	3440	3440	2448	423	60
Solanum_tuberosum	5974	6680	2976	2682	184
Sorghum_bicolor	4624	5305	2682	1737	1057
Spirodela_polyrhiza	2111	2111	1536	86	174
Theobroma_cacao	4137	4268	3306	461	59
Triticum_aestivum	23359	38820	21132	5714	1039
Vitis_vinifera	2526	2526	1624	296	23
Volvox_carteri	1097	1134	592	222	371
Zea_mays	16857	18110	10229	4004	2192
Zostera_marina	1393	1393	1014	55	23