Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Alyrata_922827 922827 |
scaffold_1 | 21760320 | 21760650 | Phytozome | v1.0 | Arabidopsis_lyrata | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Alyrata_922827 922827 PAC:16060355 |
Low | No | 331 | Get ORF Coding potential... Type: noncoding Potential: -0.470 Folding energies... MFEI: -26.133 AMFE: -0.577 GC content %: 45.317 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Alyrata_922827 | SwissProt | 2015-06-01 | Q9LPH0 | 4.0e-24 |
Alyrata_922827 | RepBase (RepeatMasker) | 2014-01-31 | ATCopia27_I-int |