Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Alyrata_927684 927684 |
scaffold_3 | 456637 | 457030 | Phytozome | v1.0 | Arabidopsis_lyrata | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Alyrata_927684 927684 PAC:16044110 |
Low | No | 270 | Get ORF Coding potential... Type: noncoding Potential: -0.471 Folding energies... MFEI: -26.407 AMFE: -0.557 GC content %: 47.407 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Alyrata_927684 | SwissProt | 2015-06-01 | Q9LJN8 | 1.0e-21 |