Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Stuberosum_PGSC0003DMG400010053 PGSC0003DMG400010053 |
chr02 | 66317860 | 66321075 | Phytozome | v3.4 | Solanum_tuberosum | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Stuberosum_PGSC0003DMT400026055 PGSC0003DMT400026055 PAC:24426062 |
High | No | 335 | Get ORF Coding potential... Type: noncoding Potential: -0.430 Folding energies... MFEI: -21.672 AMFE: -0.581 GC content %: 37.313 | |
Stuberosum_PGSC0003DMT400026056 PGSC0003DMT400026056 PAC:24426063 |
High | No | 335 | Get ORF Coding potential... Type: noncoding Potential: -0.421 Folding energies... MFEI: -22.985 AMFE: -0.592 GC content %: 38.806 | |
Stuberosum_PGSC0003DMT400026057 PGSC0003DMT400026057 PAC:24426064 |
High | No | 331 | Get ORF Coding potential... Type: noncoding Potential: -0.402 Folding energies... MFEI: -20.816 AMFE: -0.518 GC content %: 40.181 | |
Stuberosum_PGSC0003DMT400026058 PGSC0003DMT400026058 PAC:24426065 |
High | No | 313 | Get ORF Coding potential... Type: noncoding Potential: -0.414 Folding energies... MFEI: -22.780 AMFE: -0.566 GC content %: 40.256 |