Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Alyrata_932001 932001 |
scaffold_3 | 24397139 | 24398287 | Phytozome | v1.0 | Arabidopsis_lyrata | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Alyrata_932001 932001 PAC:16038705 |
Low | Yes | 1149 | Get ORF Coding potential... Type: noncoding Potential: -1.570 Folding energies... MFEI: -42.002 AMFE: -0.726 GC content %: 57.876 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Alyrata_932001 | RepBase (RepeatMasker) | 2014-01-31 | LSU-rRNA_Ath |