Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Klaxiflora_Kalax.0068s0047 Kalax.0068s0047 |
scaffold_68 | 409585 | 416300 | Phytozome | [[Species:|]]"Species:" cannot be used as a page name in this wiki. | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Klaxiflora_Kalax.0068s0047.1 Kalax.0068s0047.1 PAC:32598194 |
Low | No | 1147 | Get ORF Coding potential... Type: noncoding Potential: -0.652 Folding energies... MFEI: -24.821 AMFE: -0.608 GC content %: 40.802 | |
Klaxiflora_Kalax.0068s0047.2 Kalax.0068s0047.2 PAC:32598195 |
Low | No | 494 | Get ORF Coding potential... Type: noncoding Potential: -0.364 Folding energies... MFEI: -23.806 AMFE: -0.511 GC content %: 46.559 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Klaxiflora_Kalax.0068s0047.1 | RepBase (RepeatMasker) | 2014-01-31 | Gypsy-27_ST-I | |
Klaxiflora_Kalax.0068s0047.1 | SwissProt | 2015-06-01 | Q6ZLK0 | 1.0e-5 |
Klaxiflora_Kalax.0068s0047.2 | SwissProt | 2015-06-01 | Q6ZLK0 | 1.0e-6 |