Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Spolyrhiza_Spipo28G0027000 Spipo28G0027000 |
pseudo28 | 1817492 | 1818961 | Phytozome | v2 | Spirodela_polyrhiza | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Spolyrhiza_Spipo28G0027000 Spipo28G0027000 PAC:31512190 |
Low | No | 294 | Get ORF Coding potential... Type: noncoding Potential: -0.499 Folding energies... MFEI: -31.565 AMFE: -0.576 GC content %: 54.762 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Spolyrhiza_Spipo28G0027000 | RepBase (RepeatMasker) | 2014-01-31 | Gypsy29-ZM_I-int | |
Spolyrhiza_Spipo28G0027000 | SwissProt | 2015-06-01 | Q0JNK5 | 5.0e-8 |