Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Stuberosum_PGSC0003DMG400003624 PGSC0003DMG400003624 |
chr02 | 61770742 | 61773079 | Phytozome | v3.4 | Solanum_tuberosum | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Stuberosum_PGSC0003DMT400009325 PGSC0003DMT400009325 PAC:24427654 |
High | No | 582 | Get ORF Coding potential... Type: noncoding Potential: -1.147 Folding energies... MFEI: -24.553 AMFE: -0.662 GC content %: 37.113 | |
Stuberosum_PGSC0003DMT400009326 PGSC0003DMT400009326 PAC:24427655 |
Low | No | 991 | Get ORF Coding potential... Type: noncoding Potential: -1.198 Folding energies... MFEI: -23.411 AMFE: -0.674 GC content %: 34.712 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Stuberosum_PGSC0003DMT400009326 | RepBase (RepeatMasker) | 2014-01-31 | hAT-N2_STu |