Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Stuberosum_PGSC0003DMG405025785 PGSC0003DMG405025785 |
chr01 | 90483520 | 90485085 | Phytozome | v3.4 | Solanum_tuberosum | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Stuberosum_PGSC0003DMT400066288 PGSC0003DMT400066288 PAC:24421360 |
Low | No | 1566 | Get ORF Coding potential... Type: noncoding Potential: -0.915 Folding energies... MFEI: -20.223 AMFE: -0.574 GC content %: 35.249 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Stuberosum_PGSC0003DMT400066288 | SwissProt | 2015-06-01 | Q8S944 | 3.0e-32 |