Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Taestivum_Traes_7AS_2D94ACEA3 Traes_7AS_2D94ACEA3 |
ta_iwgsc_7as_v1_4175519 | 3991 | 5793 | Phytozome | v2.2 | Triticum_aestivum | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Taestivum_Traes_7AS_2D94ACEA3.1 Traes_7AS_2D94ACEA3.1 PAC:31907686 |
High | No | 727 | Get ORF Coding potential... Type: noncoding Potential: -0.863 Folding energies... MFEI: -31.733 AMFE: -0.677 GC content %: 46.905 | |
Taestivum_Traes_7AS_2D94ACEA3.2 Traes_7AS_2D94ACEA3.2 PAC:31907685 |
Low | No | 1453 | Get ORF Coding potential... Type: noncoding Potential: -0.933 Folding energies... MFEI: -29.167 AMFE: -0.697 GC content %: 41.844 | |
Taestivum_Traes_7AS_2D94ACEA3.3 Traes_7AS_2D94ACEA3.3 PAC:31907687 |
Low | No | 826 | Get ORF Coding potential... Type: noncoding Potential: -1.309 Folding energies... MFEI: -22.688 AMFE: -0.669 GC content %: 33.898 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Taestivum_Traes_7AS_2D94ACEA3.2 | RepBase (RepeatMasker) | 2014-01-31 | HADES_TA | |
Taestivum_Traes_7AS_2D94ACEA3.3 | RepBase (RepeatMasker) | 2014-01-31 | HADES_TA |