Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Ahalleri_Araha.34729s0002 Araha.34729s0002 |
Scaffold34729 | 3369 | 6159 | Phytozome | [[Species:|]]"Species:" cannot be used as a page name in this wiki. | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Ahalleri_Araha.34729s0002.1 Araha.34729s0002.1 PAC:28847050 |
Low | No | 2719 | Get ORF Coding potential... Type: noncoding Potential: -0.920 Folding energies... MFEI: -27.021 AMFE: -0.669 GC content %: 40.382 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Ahalleri_Araha.34729s0002.1 | RepBase (RepeatMasker) | 2014-01-31 | Gypsy-112_GM-I |