Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Athaliana_AT1G01448 AT1G01448 |
Chr1 | 163376 | 166344 | Phytozome | TAIR10 | Arabidopsis_thaliana | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Athaliana_AT1G01448.1 AT1G01448.1 |
High | No | 2119 | Get ORF Coding potential... Type: noncoding Potential: -0.995 Folding energies... MFEI: -25.512 AMFE: -0.573 GC content %: 44.502 | |
Athaliana_AT1G01448.2 AT1G01448.2 |
High | No | 1034 | Get ORF Coding potential... Type: noncoding Potential: -0.935 Folding energies... MFEI: -26.692 AMFE: -0.607 GC content %: 44.003 | |
Athaliana_AT1G01448.3 AT1G01448.3 |
High | No | 652 | Get ORF Coding potential... Type: noncoding Potential: -1.050 Folding energies... MFEI: -25.782 AMFE: -0.549 GC content %: 46.932 |