Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Athaliana_AT1G26558 AT1G26558 |
Chr1 | 9175611 | 9177602 | Phytozome | TAIR10 | Arabidopsis_thaliana | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Athaliana_AT1G26558.1 AT1G26558.1 |
Low | No | 483 | Get ORF Coding potential... Type: noncoding Potential: -1.100 Folding energies... MFEI: -27.308 AMFE: -0.673 GC content %: 40.579 | |
Athaliana_AT1G26558.2 AT1G26558.2 |
Low | No | 1432 | Get ORF Coding potential... Type: noncoding Potential: -1.219 Folding energies... MFEI: -22.723 AMFE: -0.650 GC content %: 34.986 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Athaliana_AT1G26558.2 | NONCODE | 3 | NONATHT000201 | |
Athaliana_AT1G26558.1 | RepBase (RepeatMasker) | 2014-01-31 | Harbinger | |
Athaliana_AT1G26558.2 | RepBase (RepeatMasker) | 2014-01-31 | Harbinger | |
Athaliana_AT1G26558.1 | NONCODE | 3 | NONATHT000200 |