Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Athaliana_AT4G06701 AT4G06701 |
Chr4 | 3939266 | 3940797 | Phytozome | TAIR10 | Arabidopsis_thaliana | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Athaliana_AT4G06701.1 AT4G06701.1 |
High | No | 508 | Get ORF Coding potential... Type: noncoding Potential: -1.231 Folding energies... MFEI: -24.173 AMFE: -0.558 GC content %: 43.307 | |
Athaliana_AT4G06701.2 AT4G06701.2 |
High | No | 655 | Get ORF Coding potential... Type: noncoding Potential: -1.313 Folding energies... MFEI: -23.710 AMFE: -0.588 GC content %: 40.305 | |
Athaliana_AT4G06701.3 AT4G06701.3 |
High | No | 637 | Get ORF Coding potential... Type: noncoding Potential: -1.310 Folding energies... MFEI: -23.799 AMFE: -0.602 GC content %: 39.560 | |
Athaliana_AT4G06701.4 AT4G06701.4 |
High | No | 511 | Get ORF Coding potential... Type: noncoding Potential: -1.232 Folding energies... MFEI: -24.188 AMFE: -0.562 GC content %: 43.052 | |
Athaliana_AT4G06701.5 AT4G06701.5 |
High | No | 596 | Get ORF Coding potential... Type: noncoding Potential: -1.185 Folding energies... MFEI: -21.997 AMFE: -0.578 GC content %: 38.087 |