Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Cpapaya_evm.TU.supercontig_5.337 evm.TU.supercontig_5.337 |
supercontig_5 | 3116758 | 3117156 | Phytozome | ASGPBv0.4 | Carica_papaya | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Cpapaya_evm.model.supercontig_5.337 evm.model.supercontig_5.337 PAC:16421459 |
Low | No | 201 | Get ORF Coding potential... Type: noncoding Potential: -0.462 Folding energies... MFEI: -16.766 AMFE: -0.379 GC content %: 44.279 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Cpapaya_evm.model.supercontig_5.337 | RepBase (RepeatMasker) | 2014-01-31 | ATCopia24I |