Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Graimondii_Gorai.001G036100 Gorai.001G036100 |
Chr01 | 3321655 | 3323883 | Phytozome | v2.1 | Gossypium_raimondii | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Graimondii_Gorai.001G036100.1 Gorai.001G036100.1 PAC:26823381 |
High | No | 1230 | Get ORF Coding potential... Type: noncoding Potential: -1.110 Folding energies... MFEI: -24.911 AMFE: -0.652 GC content %: 38.211 | |
Graimondii_Gorai.001G036100.2 Gorai.001G036100.2 PAC:26823382 |
High | No | 1326 | Get ORF Coding potential... Type: noncoding Potential: -1.119 Folding energies... MFEI: -24.932 AMFE: -0.665 GC content %: 37.481 | |
Graimondii_Gorai.001G036100.3 Gorai.001G036100.3 PAC:26823383 |
High | No | 688 | Get ORF Coding potential... Type: noncoding Potential: -0.863 Folding energies... MFEI: -27.413 AMFE: -0.691 GC content %: 39.680 |