Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Ppatens_Pp3c11_11700 Pp3c11_11700 |
Chr11 | 7513894 | 7515936 | Phytozome | v3.3 | Physcomitrella_patens | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Ppatens_Pp3c11_11700V3.1 Pp3c11_11700V3.1 PAC:32958866 |
High | No | 385 | Get ORF Coding potential... Type: noncoding Potential: -0.427 Folding energies... MFEI: -31.403 AMFE: -0.596 GC content %: 52.727 | |
Ppatens_Pp3c11_11700V3.2 Pp3c11_11700V3.2 PAC:32958867 |
High | No | 201 | Get ORF Coding potential... Type: noncoding Potential: -0.277 Folding energies... MFEI: -30.000 AMFE: -0.486 GC content %: 61.692 | |
Ppatens_Pp3c11_11700V3.3 Pp3c11_11700V3.3 PAC:32958865 |
High | No | 596 | Get ORF Coding potential... Type: noncoding Potential: -0.802 Folding energies... MFEI: -28.943 AMFE: -0.618 GC content %: 46.812 |