Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Ptrichocarpa_Potri.001G001800 Potri.001G001800 |
Chr01 | 124909 | 127145 | Phytozome | v3.0 | Populus_trichocarpa | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Ptrichocarpa_Potri.001G001800.1 Potri.001G001800.1 PAC:27041150 |
High | No | 1299 | Get ORF Coding potential... Type: noncoding Potential: -1.299 Folding energies... MFEI: -27.190 AMFE: -0.682 GC content %: 39.877 | |
Ptrichocarpa_Potri.001G001800.2 Potri.001G001800.2 PAC:27041151 |
High | No | 1169 | Get ORF Coding potential... Type: noncoding Potential: -0.956 Folding energies... MFEI: -27.399 AMFE: -0.667 GC content %: 41.061 |