Gene

Slycopersicum Solyc01g016530.1

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Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Source Assembly Species Details

Slycopersicum_Solyc01g016530.1
Solyc01g016530.1
SL2.50ch01 20443427 20444138 Phytozome ITAG2.4 Solanum_lycopersicum
Coding?
No


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Sequence Details

Slycopersicum_Solyc01g016530.1.1
Solyc01g016530.1.1
High No 264
Coding potential...
Type: noncoding Potential: -0.513
Folding energies...
MFEI: -28.750 AMFE: -0.696
GC content
%: 41.288


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

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